RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

15 rows where analysis = "diamond", bioproject = "PRJNA641991" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 15 ✖

bioproject 1

  • PRJNA641991 · 15 ✖

analysis 1

  • diamond · 15 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8271054 8271054 PRJNA641991_S_NODE_4007_length_266_cov_1.175115_g3888_i0 PRJNA641991 4007 266 1.175115 3.1258059 Acanthamoeba healyi 65661 Discosea other_Eukaryota 119 3.8e-30   NR AAL67857.1 65661 g3888 i0 62.1 2.95488721804511 87 33 98.1 0 261 1 174 260 AAL67857.1 cysteine proteinase [Acanthamoeba healyi] diamond 786 119 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba healyi
21020196 21020196 PRJNA641991_S_NODE_6757_length_212_cov_0.938650_g6638_i0 PRJNA641991 6757 212 0.93865 1.989938 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 101 2.87e-24   NR XP_003294400.1 5786 g6638 i0 68.6 43.5849056603774 70 22 99.1 0 211 2 133 202 XP_003294400.1 uncharacterized protein DICPUDRAFT_51485 [Dictyostelium purpureum] diamond 9240 101 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
27144030 27144030 PRJNA641991_S_NODE_13002_length_165_cov_0.879310_g12883_i0 PRJNA641991 13002 165 0.87931 1.4508615 Dictyostelium purpureum 5786 Evosea other_Eukaryota 83.2 2.33e-17   NR XP_003287614.1 5786 g12883 i0 85.5 1 55 8 100 0 165 1 186 240 XP_003287614.1 calcium-regulated actin-bundling protein [Dictyostelium purpureum] diamond 165 83.2 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
27808001 27808001 PRJNA641991_S_NODE_6124_length_221_cov_0.872093_g6005_i0 PRJNA641991 6124 221 0.872093 1.92732553 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 53.9 3.09e-6   NR XP_004341646.1 1257118 g6005 i0 52.1 0.65158371040724 48 20 61.1 1 219 85 335 382 XP_004341646.1 papain family cysteine protease containing protein [Acanthamoeba castellanii str. Neff] diamond 144 53.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27965584 27965584 PRJNA641991_S_NODE_14405_length_162_cov_0.902655_g14286_i0 PRJNA641991 14405 162 0.902655 1.4623011 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 83.2 2.84e-17   NR XP_004341120.1 1257118 g14286 i0 71.7 1.96296296296296 53 15 98.1 0 1 159 105 157 XP_004341120.1 spliceosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 318 83.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28597263 28597263 PRJNA641991_S_NODE_14727_length_161_cov_0.910714_g14608_i0 PRJNA641991 14727 161 0.910714 1.46624954 Copromyxa protea 931554 Tubulinea other_Eukaryota 97.1 6.75e-22   NR BAN33737.1 931554 g14608 i0 83 5.92546583850932 53 9 98.8 0 159 1 277 329 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 954 97.1 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
28786388 28786388 PRJNA641991_S_NODE_9227_length_186_cov_1.116788_g9108_i0 PRJNA641991 9227 186 1.116788 2.07722568 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 69.7 5.28e-12   NR XP_004341947.1 1257118 g9108 i0 61.7 2.93548387096774 60 22 96.8 1 182 3 555 613 XP_004341947.1 gelation factor, putative [Acanthamoeba castellanii str. Neff] diamond 546 69.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29070939 29070939 PRJNA641991_S_NODE_11928_length_167_cov_1.296610_g11809_i0 PRJNA641991 11928 167 1.29661 2.1653387 Tieghemostelium lacteum 361077 Evosea other_Eukaryota 74.3 8.1e-15   NR KYR01920.1 361077 g11809 i0 82.6 0.826347305389222 46 8 82.6 0 5 142 96 141 KYR01920.1 S60 ribosomal protein L17 [Tieghemostelium lacteum] diamond 138 74.3 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
29714151 29714151 PRJNA641991_S_NODE_13730_length_163_cov_0.894737_g13611_i0 PRJNA641991 13730 163 0.894737 1.45842131 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 97.4 4.1800000000000003e-22   NR XP_004354490.1 261658 g13611 i0 75.9 5.98159509202454 54 13 99.4 0 1 162 288 341 XP_004354490.1 S-adenosyl-L-homocysteine hydrolase [Cavenderia fasciculata] diamond 975 98.2 0.991853360488798 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
29935729 29935729 PRJNA641991_S_NODE_10251_length_178_cov_1.186047_g10132_i0 PRJNA641991 10251 178 1.186047 2.11116366 Eumycetozoa 142796 Evosea other_Eukaryota 85.1 7.94e-19   NR KYR02571.1 361077 g10132 i0 74.6 3.97752808988764 59 15 99.4 0 178 2 51 109 KYR02571.1 ribosomal protein [Tieghemostelium lacteum] diamond 708 85.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
30744790 30744790 PRJNA641991_S_NODE_5554_length_230_cov_1.408840_g5435_i0 PRJNA641991 5554 230 1.40884 3.240332 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 89 3.64e-20   NR XP_004334891.1 1257118 g5435 i0 58.5 0.847826086956522 65 27 84.8 0 1 195 107 171 XP_004334891.1 ribosomal protein L11, domain containing protein [Acanthamoeba castellanii str. Neff] diamond 195 89 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
30788659 30788659 PRJNA641991_S_NODE_13354_length_164_cov_0.886957_g13235_i0 PRJNA641991 13354 164 0.886957 1.45460948 Acytosteliaceae 2058183 Evosea other_Eukaryota 45.8 0.00104   NR XP_020428908.1 670386 g13235 i0 62.5 1.55487804878049 32 10 54.9 1 164 75 359 390 XP_020428908.1 putative protein tyrosine phosphatase [Heterostelium album PN500] diamond 255 46.2 0.991341991341991 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Heterostelium Heterostelium album
30851798 30851798 PRJNA641991_S_NODE_8234_length_195_cov_1.047945_g8115_i0 PRJNA641991 8234 195 1.047945 2.04349275 Eumycetozoa 142796 Evosea other_Eukaryota 60.1 1.49e-8   NR XP_003284481.1 5786 g8115 i0 50.8 5.75384615384615 63 28 96.9 2 194 6 550 609 XP_003284481.1 uncharacterized protein DICPUDRAFT_91322 [Dictyostelium purpureum] diamond 1122 60.1 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
31155121 31155121 PRJNA641991_P_NODE_1775_length_232_cov_1.038251_g1734_i0 PRJNA641991 1775 232 1.038251 2.40874232 Copromyxa protea 931554 Tubulinea other_Eukaryota 125 8.87e-32   NR BAN33737.1 931554 g1734 i0 72.7 1.97844827586207 77 21 99.6 0 1 231 296 372 BAN33737.1 elongation factor-like protein [Copromyxa protea] diamond 459 125 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa protea
31471913 31471913 PRJNA641991_S_NODE_14876_length_161_cov_0.910714_g14757_i0 PRJNA641991 14876 161 0.910714 1.46624954 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 65.5 3.36e-11   NR XP_004341316.1 1257118 g14757 i0 59.6 0.875776397515528 47 19 87.6 0 19 159 112 158 XP_004341316.1 proteasome subunit beta type2, putative [Acanthamoeba castellanii str. Neff] diamond 141 65.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;