RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA641707" and tax_phylum = "Vulcanimicrobiota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Vulcanimicrobiota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA641707 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8270762 8270762 PRJNA641707_P_NODE_88507_length_246_cov_5.994924_g85844_i0 PRJNA641707 88507 246 5.994924 14.74751304 Candidatus Cybelea sp. 2952917 Bacteria Bacteria 97.8 1.66e-21   NR HVO03986.1 2952917 g85844 i0 55.9 2.70731707317073 111 18 97.6 1 7 246 185 295 HVO03986.1 phosphoribosylformylglycinamidine synthase subunit PurL [Candidatus Cybelea sp.] diamond 666 97.8 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Cybelea Candidatus Cybelea sp.
18467282 18467282 PRJNA641707_P_NODE_290475_length_167_cov_1.864407_g287812_i0 PRJNA641707 290475 167 1.864407 3.11355969 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 103 1.69e-25   NR MFA5504023.1 3107663 g287812 i0 94.4 0.970059880239521 54 3 97 0 2 163 47 100 MFA5504023.1 Crp/Fnr family transcriptional regulator [Vulcanimicrobiota bacterium] diamond 162 103 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
28281064 28281064 PRJNA641707_P_NODE_238006_length_187_cov_5.224638_g235343_i0 PRJNA641707 238006 187 5.224638 9.77007306 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 79.3 2.25e-15   NR MFN8611279.1 3107663 g235343 i0 63.3 0.962566844919786 60 20 93 1 180 7 324 383 MFN8611279.1 methionine--tRNA ligase [Vulcanimicrobiota bacterium] diamond 180 79.3 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
28754916 28754916 PRJNA641707_P_NODE_286807_length_168_cov_2.789916_g284144_i0 PRJNA641707 286807 168 2.789916 4.68705888 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 73.9 1.09e-13   NR MFA5506428.1 3107663 g284144 i0 70 0.892857142857143 50 15 89.3 0 166 17 324 373 MFA5506428.1 histidinol-phosphate transaminase [Vulcanimicrobiota bacterium] diamond 150 73.9 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
29228681 29228681 PRJNA641707_P_NODE_175249_length_200_cov_13.536424_g172586_i0 PRJNA641707 175249 200 13.536424 27.072848 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 45.1 0.00318   NR MFA5508587.1 3107663 g172586 i0 61.5 0.585 39 15 58.5 0 5 121 296 334 MFA5508587.1 adenylate/guanylate cyclase domain-containing protein [Vulcanimicrobiota bacterium] diamond 117 45.1 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
30713056 30713056 PRJNA641707_P_NODE_326494_length_155_cov_6.981132_g323831_i0 PRJNA641707 326494 155 6.981132 10.8207546 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 85.9 4.8e-18   NR MFA7484100.1 3107663 g323831 i0 68 1.93548387096774 50 16 96.8 0 6 155 289 338 MFA7484100.1 S-layer homology domain-containing protein [Vulcanimicrobiota bacterium] diamond 300 85.9 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
31439916 31439916 PRJNA641707_P_NODE_272876_length_173_cov_4.040323_g270213_i0 PRJNA641707 272876 173 4.040323 6.98975879 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 96.7 1.44e-21   NR MFA5504535.1 3107663 g270213 i0 73.7 1.94219653179191 57 15 98.8 0 2 172 25 81 MFA5504535.1 hypothetical protein [Vulcanimicrobiota bacterium] diamond 336 96.7 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium
31566849 31566849 PRJNA641707_P_NODE_95916_length_246_cov_4.802030_g93253_i0 PRJNA641707 95916 246 4.80203 11.8129938 Candidatus Elarobacter sp. 3047550 Bacteria Bacteria 67.4 7.53e-11   NR HEX3468584.1 3047550 g93253 i0 48.1 0.939024390243902 77 32 84.1 1 12 218 294 370 HEX3468584.1 hypothetical protein [Candidatus Elarobacter sp.] diamond 231 67.4 1 Bacteria   Bacillati Vulcanimicrobiota Vulcanimicrobiia Vulcanimicrobiales Vulcanimicrobiaceae Candidatus Elarobacter Candidatus Elarobacter sp.
32893561 32893561 PRJNA641707_P_NODE_221900_length_192_cov_18.069930_g219237_i0 PRJNA641707 221900 192 18.06993 34.6942656 Vulcanimicrobiota bacterium 3107663 Bacteria Bacteria 115 6.55e-28   NR MFN8606726.1 3107663 g219237 i0 82.8 1 64 11 100 0 192 1 954 1017 MFN8606726.1 RHS repeat-associated core domain-containing protein [Vulcanimicrobiota bacterium] diamond 192 115 1 Bacteria   Bacillati Vulcanimicrobiota         Vulcanimicrobiota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;