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contig_metadata

30 rows where analysis = "diamond", bioproject = "PRJNA641707" and tax_phylum = "Rhodophyta"

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tax_superkingdom 1

tax_phylum 1

  • Rhodophyta · 30 ✖

bioproject 1

  • PRJNA641707 · 30 ✖

analysis 1

  • diamond · 30 ✖

tax_kingdom 0

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1888361 1888361 PRJNA641707_P_NODE_1622_length_1453_cov_21.076923_g1067_i0 PRJNA641707 1622 1453 21.076923 306.24769119 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 362 5.95e-116   NR XP_005708287.1 130081 g1067 i0 45.5 11.0110116999312 442 234 90.2 5 70 1380 57 496 XP_005708287.1 myo-inositol-1-phosphate synthase [Galdieria sulphuraria] diamond 15999 362 1 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria sulphuraria
5718825 5718825 PRJNA641707_P_NODE_295585_length_165_cov_7.818966_g292922_i0 PRJNA641707 295585 165 7.818966 12.9012939 Porphyridium purpureum 35688 Rhodophyta other_Eukaryota 91.3 4.44e-21   NR KAA8494063.1 35688 g292922 i0 78.8 7.43636363636364 52 11 94.5 0 158 3 42 93 KAA8494063.1 60S ribosomal protein L10 [Porphyridium purpureum] diamond 1227 91.3 1 Eukaryota     Rhodophyta Bangiophyceae Porphyridiales Porphyridiaceae Porphyridium Porphyridium purpureum
5719642 5719642 PRJNA641707_P_NODE_331705_length_153_cov_13.548077_g329042_i0 PRJNA641707 331705 153 13.548077 20.72855781 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 55.8 2.46e-7   NR XP_005703361.1 130081 g329042 i0 75 3.19607843137255 32 8 62.7 0 120 25 283 314 XP_005703361.1 uncharacterized protein Gasu_55280 [Galdieria sulphuraria] diamond 489 56.2 0.99288256227758 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria sulphuraria
9541472 9541472 PRJNA641707_P_NODE_195828_length_198_cov_5.147651_g193165_i0 PRJNA641707 195828 198 5.147651 10.19234898 Porphyridiaceae 2799 Rhodophyta other_Eukaryota 105 6.38e-25   NR KAA8494988.1 35688 g193165 i0 68.8 1.93939393939394 64 20 97 0 194 3 145 208 KAA8494988.1 Elongation factor 1-alpha [Porphyridium purpureum] diamond 384 106 0.990566037735849 Eukaryota     Rhodophyta Bangiophyceae Porphyridiales Porphyridiaceae Porphyridium Porphyridium purpureum
23570053 23570053 PRJNA641707_P_NODE_8299_length_742_cov_9.492063_g6480_i0 PRJNA641707 8299 742 9.492063 70.43110746 Rhodosorus marinus 101924 Rhodophyta other_Eukaryota 97.4 2.17e-19   NR KAJ8907864.1 101924 g6480 i0 38 0.671159029649596 166 88 63.1 6 605 138 24 184 KAJ8907864.1 hypothetical protein NDN08_007968 [Rhodosorus marinus] diamond 498 97.4 1 Eukaryota     Rhodophyta Stylonematophyceae Stylonematales Stylonemataceae Rhodosorus Rhodosorus marinus
26745039 26745039 PRJNA641707_P_NODE_287141_length_168_cov_1.823529_g284478_i0 PRJNA641707 287141 168 1.823529 3.06352872 Opisthokonta 33154 Rhodophyta other_Eukaryota 87.4 1.53e-18   NR OSX80570.1 2786 g284478 i0 76.5 10.4107142857143 51 12 91.1 0 7 159 204 254 OSX80570.1 hypothetical protein BU14_0049s0014 [Porphyra umbilicalis] diamond 1749 87.8 0.995444191343964 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Porphyra Porphyra umbilicalis
26998412 26998412 PRJNA641707_P_NODE_164862_length_204_cov_2.761290_g162199_i0 PRJNA641707 164862 204 2.76129 5.6330316 Metazoa 33208 Rhodophyta other_Eukaryota 48.1 2.73e-4   NR KAJ8907282.1 101924 g162199 i0 37.7 3.76470588235294 69 38 94.1 2 12 203 361 429 KAJ8907282.1 hypothetical protein NDN08_007397 [Rhodosorus marinus] diamond 768 48.1 1 Eukaryota     Rhodophyta Stylonematophyceae Stylonematales Stylonemataceae Rhodosorus Rhodosorus marinus
27049611 27049611 PRJNA641707_P_NODE_230762_length_190_cov_2.985816_g228099_i0 PRJNA641707 230762 190 2.985816 5.6730504 Gracilariopsis chorda 448386 Rhodophyta other_Eukaryota 76.3 2.39e-14   NR PXF47877.1 448386 g228099 i0 57.4 0.963157894736842 61 26 96.3 0 6 188 314 374 PXF47877.1 UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Gracilariopsis chorda] diamond 183 76.3 1 Eukaryota     Rhodophyta Florideophyceae Gracilariales Gracilariaceae Gracilariopsis Gracilariopsis chorda
27061868 27061868 PRJNA641707_P_NODE_29162_length_401_cov_5.875000_g26556_i0 PRJNA641707 29162 401 5.875 23.55875 root 1 Root_unresolved Root_unresolved 63.2 1.47e-8   NR KAK4536690.1 2771 g26556 i0 87.5 29.356608478803 32 4 23.9 0 288 193 420 451 KAK4536690.1 hypothetical protein CDCA_CDCA09G2715 [Cyanidium caldarium] diamond 11772 63.5 0.995275590551181 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidium Cyanidium caldarium
27207233 27207233 PRJNA641707_P_NODE_116862_length_245_cov_17.357143_g114199_i0 PRJNA641707 116862 245 17.357143 42.52500035 Porphyra umbilicalis 2786 Rhodophyta other_Eukaryota 48.5 3.49e-4   NR OSX69260.1 2786 g114199 i0 61.3 1.13877551020408 31 12 38 0 8 100 285 315 OSX69260.1 hypothetical protein BU14_1685s0001 [Porphyra umbilicalis] diamond 279 48.5 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Porphyra Porphyra umbilicalis
27270753 27270753 PRJNA641707_P_NODE_24883_length_436_cov_11.656331_g22304_i0 PRJNA641707 24883 436 11.656331 50.82160316 Rhodosorus marinus 101924 Rhodophyta other_Eukaryota 44.7 0.0194   NR KAJ8909161.1 101924 g22304 i0 57.1 1.18348623853211 28 12 19.3 0 146 63 117 144 KAJ8909161.1 hypothetical protein NDN08_005855 [Rhodosorus marinus] diamond 516 44.7 1 Eukaryota     Rhodophyta Stylonematophyceae Stylonematales Stylonemataceae Rhodosorus Rhodosorus marinus
27535931 27535931 PRJNA641707_P_NODE_143203_length_241_cov_3.421875_g140540_i0 PRJNA641707 143203 241 3.421875 8.24671875 Fungi 4751 Rhodophyta other_Eukaryota 86.7 7.7e-19   NR XP_005705732.1 130081 g140540 i0 64.1 8.76348547717842 64 23 79.7 0 227 36 136 199 XP_005705732.1 DNA-directed RNA polymerase II subunit E [Galdieria sulphuraria] diamond 2112 86.7 1 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria sulphuraria
27902151 27902151 PRJNA641707_P_NODE_208505_length_196_cov_2.863946_g205842_i0 PRJNA641707 208505 196 2.863946 5.61333416 Galdieria yellowstonensis 3028027 Rhodophyta other_Eukaryota 62 3.15e-9   NR KAK4528864.1 3028027 g205842 i0 61.9 0.642857142857143 42 16 64.3 0 132 7 180 221 KAK4528864.1 hypothetical protein GAYE_SCF65G6811 [Galdieria yellowstonensis] diamond 126 62 1 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria yellowstonensis
27946358 27946358 PRJNA641707_P_NODE_240245_length_186_cov_5.956204_g237582_i0 PRJNA641707 240245 186 5.956204 11.07853944 root 1 Root_unresolved Root_unresolved 65.5 2.23e-11   NR XP_005711156.1 2769 g237582 i0 81.1 25.0483870967742 37 7 59.7 0 185 75 71 107 XP_005711156.1 Ribosomal-ubiquitin fusion protein [Chondrus crispus] diamond 4659 65.9 0.993930197268589 Eukaryota     Rhodophyta Florideophyceae Gigartinales Gigartinaceae Chondrus Chondrus crispus
28041163 28041163 PRJNA641707_P_NODE_68025_length_255_cov_4.616505_g65362_i0 PRJNA641707 68025 255 4.616505 11.77208775 Galdieria 83373 Rhodophyta other_Eukaryota 43.1 0.0299   NR XP_005703459.1 130081 g65362 i0 45.5 0.776470588235294 33 18 38.8 0 100 2 67 99 XP_005703459.1 isocitrate dehydrogenase (NAD+) [Galdieria sulphuraria] diamond 198 43.1 1 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria sulphuraria
29449386 29449386 PRJNA641707_P_NODE_95310_length_246_cov_4.888325_g92647_i0 PRJNA641707 95310 246 4.888325 12.0252795 Cyanidium caldarium 2771 Rhodophyta other_Eukaryota 43.9 0.0148   NR KAK4536910.1 2771 g92647 i0 58.1 0.378048780487805 31 13 37.8 0 146 238 290 320 KAK4536910.1 hypothetical protein CDCA_CDCA10G2935 [Cyanidium caldarium] diamond 93 43.9 1 Eukaryota     Rhodophyta Bangiophyceae Cyanidiales Cyanidiaceae Cyanidium Cyanidium caldarium
29512505 29512505 PRJNA641707_P_NODE_258210_length_179_cov_2.261538_g255547_i0 PRJNA641707 258210 179 2.261538 4.04815302 Chondrus crispus 2769 Rhodophyta other_Eukaryota 48.1 1.96e-4   NR XP_005710957.1 2769 g255547 i0 52.3 0.737430167597765 44 21 73.7 0 16 147 182 225 XP_005710957.1 unnamed protein product [Chondrus crispus] diamond 132 48.1 1 Eukaryota     Rhodophyta Florideophyceae Gigartinales Gigartinaceae Chondrus Chondrus crispus
29544099 29544099 PRJNA641707_P_NODE_253970_length_180_cov_10.099237_g251307_i0 PRJNA641707 253970 180 10.099237 18.1786266 Bulboplastis apyrenoidosa 1070855 Rhodophyta other_Eukaryota 61.6 3.42e-9   NR YP_009370203.1 1070855 g251307 i0 59.1 0.733333333333333 44 18 73.3 0 133 2 34 77 YP_009370203.1 putative reverse transcriptase/maturase [Bulboplastis apyrenoidosa] diamond 132 61.6 1 Eukaryota     Rhodophyta Rhodellophyceae Dixoniellales Dixoniellaceae Bulboplastis Bulboplastis apyrenoidosa
29556452 29556452 PRJNA641707_P_NODE_262550_length_177_cov_4.437500_g259887_i0 PRJNA641707 262550 177 4.4375 7.854375 Fungi 4751 Rhodophyta other_Eukaryota 113 8.03e-29   NR XP_005705136.1 130081 g259887 i0 86 21.3050847457627 57 8 96.6 0 173 3 148 204 XP_005705136.1 protein phosphatase [Galdieria sulphuraria] diamond 3771 114 0.991228070175439 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria sulphuraria
29714122 29714122 PRJNA641707_P_NODE_30990_length_389_cov_4.429412_g28378_i0 PRJNA641707 30990 389 4.429412 17.23041268 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 68.9 1.14e-10   NR KAJ8906519.1 101924 g28378 i0 38.5 3.60925449871465 78 48 60.2 0 272 39 314 391 KAJ8906519.1 hypothetical protein NDN08_003012 [Rhodosorus marinus] diamond 1404 68.9 1 Eukaryota     Rhodophyta Stylonematophyceae Stylonematales Stylonemataceae Rhodosorus Rhodosorus marinus
29765181 29765181 PRJNA641707_P_NODE_71111_length_248_cov_6.381910_g68448_i0 PRJNA641707 71111 248 6.38191 15.8271368 Porphyridium purpureum 35688 Rhodophyta other_Eukaryota 42.4 0.0382   NR KAA8495416.1 35688 g68448 i0 71.4 0.338709677419355 28 8 33.9 0 16 99 88 115 KAA8495416.1 Mitochondrial import inner membrane translocase subunit TIM17-2 [Porphyridium purpureum] diamond 84 42.4 1 Eukaryota     Rhodophyta Bangiophyceae Porphyridiales Porphyridiaceae Porphyridium Porphyridium purpureum
30491852 30491852 PRJNA641707_P_NODE_135133_length_243_cov_5.000000_g132470_i0 PRJNA641707 135133 243 5 12.15 Gracilaria domingensis 172961 Rhodophyta other_Eukaryota 48.5 3.34e-4   NR KAI0565161.1 172961 g132470 i0 28.4 3.49382716049383 109 45 93.8 2 15 242 270 378 KAI0565161.1 Translation initiation factor 2A [Gracilaria domingensis] diamond 849 48.5 1 Eukaryota     Rhodophyta Florideophyceae Gracilariales Gracilariaceae Gracilaria Gracilaria domingensis
30649599 30649599 PRJNA641707_P_NODE_230033_length_190_cov_5.446809_g227370_i0 PRJNA641707 230033 190 5.446809 10.3489371 Gracilariopsis chorda 448386 Rhodophyta other_Eukaryota 59.7 1.89e-8   NR PXF45403.1 448386 g227370 i0 53.6 1.76842105263158 56 26 88.4 0 189 22 101 156 PXF45403.1 TRPL translocation defect protein 14 [Gracilariopsis chorda] diamond 336 59.7 1 Eukaryota     Rhodophyta Florideophyceae Gracilariales Gracilariaceae Gracilariopsis Gracilariopsis chorda
30681173 30681173 PRJNA641707_P_NODE_191813_length_198_cov_12.489933_g189150_i0 PRJNA641707 191813 198 12.489933 24.73006734 Galdieria partita 83374 Rhodophyta other_Eukaryota 81.3 1.05e-17   NR GJQ14186.1 83374 g189150 i0 60.3 2.89393939393939 63 24 93.9 1 189 4 1 63 GJQ14186.1 hypothetical protein GpartN1_g5977.t1 [Galdieria partita] diamond 573 81.3 1 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria partita
30681294 30681294 PRJNA641707_P_NODE_68633_length_253_cov_11.764706_g65970_i0 PRJNA641707 68633 253 11.764706 29.76470618 Porphyridium purpureum 35688 Rhodophyta other_Eukaryota 42 0.0222   NR KAA8493122.1 35688 g65970 i0 37.7 0.818181818181818 69 43 81.8 0 211 5 3 71 KAA8493122.1 60S acidic ribosomal protein P1 [Porphyridium purpureum] diamond 207 42 1 Eukaryota     Rhodophyta Bangiophyceae Porphyridiales Porphyridiaceae Porphyridium Porphyridium purpureum
31800076 31800076 PRJNA641707_P_NODE_203557_length_196_cov_31.972789_g200894_i0 PRJNA641707 203557 196 31.972789 62.66666644 root 1 Root_unresolved Root_unresolved 52 1.1e-5   NR AIT70097.1 38507 g200894 i0 53.2 5.86224489795918 47 20 68.9 1 11 145 160 206 AIT70097.1 malic enzyme [Ahnfeltiopsis flabelliformis] diamond 1149 52.4 0.99236641221374 Eukaryota     Rhodophyta Florideophyceae Gigartinales Phyllophoraceae Gymnogongrus Gymnogongrus flabelliformis
31851144 31851144 PRJNA641707_P_NODE_90097_length_246_cov_5.710660_g87434_i0 PRJNA641707 90097 246 5.71066 14.0482236 Gracilariopsis lemaneiformis 2782 Rhodophyta other_Eukaryota 45.8 0.00298   NR AOW44088.1 2782 g87434 i0 59.4 0.390243902439024 32 13 39 0 241 146 264 295 AOW44088.1 mannose-1-phosphate guanylyltransferase [Gracilariopsis lemaneiformis] diamond 96 45.8 1 Eukaryota     Rhodophyta Florideophyceae Gracilariales Gracilariaceae Gracilariopsis Gracilariopsis lemaneiformis
32231167 32231167 PRJNA641707_P_NODE_70398_length_249_cov_13.775000_g67735_i0 PRJNA641707 70398 249 13.775 34.29975 Pyropia vietnamensis 683352 Rhodophyta other_Eukaryota 45.8 0.00333   NR GAB0497668.1 683352 g67735 i0 82.6 1.10843373493976 23 4 27.7 0 69 1 308 330 GAB0497668.1 hypothetical protein MMPV_009005 [Pyropia vietnamensis] diamond 276 45.8 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Pyropia Pyropia vietnamensis
32389053 32389053 PRJNA641707_P_NODE_236719_length_187_cov_13.152174_g234056_i0 PRJNA641707 236719 187 13.152174 24.59456538 Galdieria sulphuraria 130081 Rhodophyta other_Eukaryota 58.2 9.45e-9   NR XP_005705342.1 130081 g234056 i0 60.4 0.850267379679144 53 21 85 0 2 160 80 132 XP_005705342.1 translation initiation factor eIF-1A [Galdieria sulphuraria] diamond 159 58.2 1 Eukaryota     Rhodophyta Bangiophyceae Galdieriales Galdieriaceae Galdieria Galdieria sulphuraria
32401583 32401583 PRJNA641707_P_NODE_146479_length_240_cov_2.916230_g143816_i0 PRJNA641707 146479 240 2.91623 6.998952 Bangiaceae 31345 Rhodophyta other_Eukaryota 51.2 3.73e-5   NR OSX80447.1 2786 g143816 i0 42.9 2.1 56 32 70 0 67 234 75 130 OSX80447.1 hypothetical protein BU14_0052s0062 [Porphyra umbilicalis] diamond 504 51.2 1 Eukaryota     Rhodophyta Bangiophyceae Bangiales Bangiaceae Porphyra Porphyra umbilicalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;