RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA641707" and tax_phylum = "Perkinsozoa"

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tax_superkingdom 1

tax_phylum 1

  • Perkinsozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA641707 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27081057 27081057 PRJNA641707_P_NODE_186162_length_199_cov_7.586667_g183499_i0 PRJNA641707 186162 199 7.586667 15.09746733 Perkinsus olseni 32597 SAR_Eukaryotes SAR_Eukaryotes 58.2 6.76e-8   NR KAF4721267.1 32597 g183499 i0 49.1 0.829145728643216 55 26 79.9 1 159 1 85 139 KAF4721267.1 hypothetical protein FOZ63_001744 [Perkinsus olseni] diamond 165 58.2 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni
28502380 28502380 PRJNA641707_P_NODE_296767_length_165_cov_4.077586_g294104_i0 PRJNA641707 296767 165 4.077586 6.7280169 Perkinsus marinus ATCC 5 31276 SAR_Eukaryotes SAR_Eukaryotes 40.4 0.0348   NR XP_002773691.1 423536 g294104 i0 73.9 0.418181818181818 23 6 41.8 0 86 154 72 94 XP_002773691.1 splicing factor, putative [Perkinsus marinus ATCC 50983] diamond 69 40.4 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus marinus
30649548 30649548 PRJNA641707_P_NODE_171273_length_201_cov_6.355263_g168610_i0 PRJNA641707 171273 201 6.355263 12.77407863 Perkinsus olseni 32597 SAR_Eukaryotes SAR_Eukaryotes 45.8 0.00178   NR KAF4689944.1 32597 g168610 i0 40.6 1.94029850746269 64 12 95.5 1 8 199 1314 1351 KAF4689944.1 hypothetical protein FOZ60_000955 [Perkinsus olseni] diamond 390 45.8 1 Eukaryota Sar   Perkinsozoa   Perkinsida Perkinsidae Perkinsus Perkinsus olseni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;