RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA641707" and tax_phylum = "Nitrospinota"

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tax_superkingdom 1

tax_phylum 1

  • Nitrospinota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA641707 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29670155 29670155 PRJNA641707_P_NODE_253190_length_181_cov_2.939394_g250527_i0 PRJNA641707 253190 181 2.939394 5.32030314 Nitrospinae bacterium CG11_big_fil_rev_8_21_14_ 1974048 Bacteria Bacteria 57 4.44e-8   NR PIR00428.1 1974048 g250527 i0 50 0.895027624309392 54 27 89.5 0 13 174 8 61 PIR00428.1 MAG: hypothetical protein COV66_06785 [Nitrospinae bacterium CG11_big_fil_rev_8_21_14_0_20_45_15] diamond 162 57 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinae bacterium CG11_big_fil_rev_8_21_14_0_20_45_15
31218246 31218246 PRJNA641707_P_NODE_317895_length_158_cov_13.192661_g315232_i0 PRJNA641707 317895 158 13.192661 20.84440438 Nitrospinota bacterium 2026769 Bacteria Bacteria 84.7 5.47e-18   NR MBI3326113.1 2026769 g315232 i0 78.4 0.968354430379747 51 11 96.8 0 153 1 30 80 MBI3326113.1 NAD(+) diphosphatase [Nitrospinota bacterium] diamond 153 84.7 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium
31724505 31724505 PRJNA641707_P_NODE_167697_length_201_cov_29.532895_g165034_i0 PRJNA641707 167697 201 29.532895 59.36111895 Nitrospinota bacterium 2026769 Bacteria Bacteria 41.2 0.0198   NR MFC1492043.1 2026769 g165034 i0 42.9 0.73134328358209 49 28 73.1 0 183 37 38 86 MFC1492043.1 hypothetical protein [Nitrospinota bacterium] diamond 147 41.2 1 Bacteria Nitrospinota/Tectimicrobiota group Pseudomonadati Nitrospinota         Nitrospinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;