RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA641707" and tax_phylum = "Kiritimatiellota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Kiritimatiellota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA641707 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28691975 28691975 PRJNA641707_P_NODE_304527_length_163_cov_2.868421_g301864_i0 PRJNA641707 304527 163 2.868421 4.67552623 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 69.3 5.28e-12   NR MBR4257835.1 2212473 g301864 i0 76.9 0.717791411042945 39 8 69.9 1 5 118 435 473 MBR4257835.1 Gfo/Idh/MocA family oxidoreductase [Kiritimatiellia bacterium] diamond 117 69.3 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
28912492 28912492 PRJNA641707_P_NODE_243688_length_185_cov_2.750000_g241025_i0 PRJNA641707 243688 185 2.75 5.0875 Kiritimatiellaceae bacterium 2026752 Bacteria Bacteria 73.6 2.34e-13   NR RZO86512.1 2026752 g241025 i0 81 4.03783783783784 42 8 68.1 0 6 131 594 635 RZO86512.1 MAG: isoleucine--tRNA ligase [Kiritimatiellaceae bacterium] diamond 747 73.6 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia Kiritimatiellales Kiritimatiellaceae   Kiritimatiellaceae bacterium
29070830 29070830 PRJNA641707_P_NODE_254268_length_180_cov_7.625954_g251605_i0 PRJNA641707 254268 180 7.625954 13.7267172 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 41.6 0.0431   NR MBP5511690.1 2212473 g251605 i0 42.5 0.666666666666667 40 23 66.7 0 168 49 211 250 MBP5511690.1 extracellular solute-binding protein [Kiritimatiellia bacterium] diamond 120 41.6 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
30523333 30523333 PRJNA641707_P_NODE_113453_length_246_cov_2.375635_g110790_i0 PRJNA641707 113453 246 2.375635 5.8440621 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 44.7 0.00546   NR MDA3799972.1 2212473 g110790 i0 57.6 0.402439024390244 33 14 40.2 0 99 1 75 107 MDA3799972.1 nucleoside deaminase [Kiritimatiellia bacterium] diamond 99 44.7 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium
31218160 31218160 PRJNA641707_P_NODE_200335_length_197_cov_7.736486_g197672_i0 PRJNA641707 200335 197 7.736486 15.24087742 Kiritimatiellia bacterium 2212473 Bacteria Bacteria 50.8 2.28e-5   NR HMP89557.1 2212473 g197672 i0 65.6 1.47715736040609 32 11 48.7 0 194 99 3 34 HMP89557.1 thrombospondin type 3 repeat-containing protein [Kiritimatiellia bacterium] diamond 291 50.8 1 Bacteria PVC group Pseudomonadati Kiritimatiellota Kiritimatiellia       Kiritimatiellia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;