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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA641707" and tax_phylum = "Fibrobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA641707 · 7 ✖

analysis 1

  • diamond · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27270773 27270773 PRJNA641707_P_NODE_275123_length_172_cov_4.886179_g272460_i0 PRJNA641707 275123 172 4.886179 8.40422788 Fibrobacteria bacterium 2725311 Bacteria Bacteria 85.1 1.59e-17   NR MEO6098476.1 2725311 g272460 i0 72.2 0.941860465116279 54 15 94.2 0 163 2 418 471 MEO6098476.1 hypothetical protein [Fibrobacteria bacterium] diamond 162 85.1 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria       Fibrobacteria bacterium
27409760 27409760 PRJNA641707_P_NODE_123963_length_245_cov_4.571429_g121300_i0 PRJNA641707 123963 245 4.571429 11.20000105 Bacteria 2 Bacteria Bacteria 68.2 2.03e-11   NR NLW32912.1 35828 g121300 i0 87.9 2.82857142857143 33 4 40.4 0 3 101 92 124 NLW32912.1 IS5 family transposase [Fibrobacter sp.] diamond 693 68.2 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.
28155168 28155168 PRJNA641707_P_NODE_237705_length_187_cov_6.195652_g235042_i0 PRJNA641707 237705 187 6.195652 11.58586924 Fibrobacterota bacterium 2052160 Bacteria Bacteria 110 1.7600000000000002e-26   NR MBW8889910.1 2052160 g235042 i0 80 0.962566844919786 60 12 96.3 0 182 3 916 975 MBW8889910.1 DNA polymerase III subunit alpha [Fibrobacterota bacterium] diamond 180 110 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
28861849 28861849 PRJNA641707_P_NODE_38108_length_352_cov_10.775578_g35468_i0 PRJNA641707 38108 352 10.775578 37.93003456 Bacteria 2 Bacteria Bacteria 107 1.31e-24   NR MBW8889356.1 2052160 g35468 i0 75.7 2.38636363636364 70 13 59.7 1 210 1 3 68 MBW8889356.1 DUF444 family protein [Fibrobacterota bacterium] diamond 840 107 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
30776384 30776384 PRJNA641707_P_NODE_302754_length_163_cov_8.789474_g300091_i0 PRJNA641707 302754 163 8.789474 14.32684262 Fibrobacterota bacterium 2052160 Bacteria Bacteria 83.2 3.27e-17   NR MDB5102516.1 2052160 g300091 i0 76 2.76073619631902 50 11 92 1 152 3 11 59 MDB5102516.1 hypothetical protein [Fibrobacterota bacterium] diamond 450 83.2 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
31535074 31535074 PRJNA641707_P_NODE_272736_length_173_cov_4.483871_g270073_i0 PRJNA641707 272736 173 4.483871 7.75709683 Fibrobacterota bacterium 2052160 Bacteria Bacteria 45.8 9.64e-4   NR MDB5102747.1 2052160 g270073 i0 63.6 0.572254335260116 33 12 57.2 0 70 168 115 147 MDB5102747.1 hypothetical protein [Fibrobacterota bacterium] diamond 99 45.8 1 Bacteria FCB group Pseudomonadati Fibrobacterota         Fibrobacterota bacterium
31629758 31629758 PRJNA641707_P_NODE_187496_length_199_cov_6.066667_g184833_i0 PRJNA641707 187496 199 6.066667 12.07266733 Fibrobacter sp. 35828 Bacteria Bacteria 57.4 1.02e-7   NR NLW32089.1 35828 g184833 i0 72.7 1.98994974874372 33 9 49.7 0 101 3 191 223 NLW32089.1 Ku protein [Fibrobacter sp.] diamond 396 57.4 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;