RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA641707" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA641707 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27713265 27713265 PRJNA641707_P_NODE_122204_length_245_cov_5.938776_g119541_i0 PRJNA641707 122204 245 5.938776 14.5500012 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 69.3 3.09e-13   NR CEP03007.1 37360 g119541 i0 51.5 1.59183673469388 66 32 80.8 0 5 202 14 79 CEP03007.1 hypothetical protein PBRA_009225 [Plasmodiophora brassicae] diamond 390 69.3 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
27965404 27965404 PRJNA641707_P_NODE_170485_length_201_cov_7.375000_g167822_i0 PRJNA641707 170485 201 7.375 14.82375 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 62.4 2.44e-9   NR CEO95889.1 37360 g167822 i0 47.2 1.07462686567164 72 30 95.5 1 9 200 293 364 CEO95889.1 hypothetical protein PBRA_009688, partial [Plasmodiophora brassicae] diamond 216 62.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30460765 30460765 PRJNA641707_P_NODE_338793_length_150_cov_11.207921_g336130_i0 PRJNA641707 338793 150 11.207921 16.8118815 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 102 4.969999999999999e-24   NR SPQ96940.1 37360 g336130 i0 95.8 6.72 48 2 96 0 5 148 103 150 SPQ96940.1 unnamed protein product [Plasmodiophora brassicae] diamond 1008 102 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;