RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA641707" and tax_phylum = "Deferribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Deferribacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA641707 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26777191 26777191 PRJNA641707_P_NODE_237441_length_187_cov_7.231884_g234778_i0 PRJNA641707 237441 187 7.231884 13.52362308 root 1 Root_unresolved Root_unresolved 50.8 2.41e-5   NR WP_265823534.1 46201 g234778 i0 50.9 9.41711229946524 55 27 88.2 0 178 14 276 330 WP_265823534.1 ankyrin repeat domain-containing protein [Geovibrio ferrireducens] diamond 1761 50.8 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Geovibrionaceae Geovibrio Geovibrio ferrireducens
28502357 28502357 PRJNA641707_P_NODE_264447_length_176_cov_6.763780_g261784_i0 PRJNA641707 264447 176 6.76378 11.9042528 Limisalsivibrio acetivorans 1304888 Bacteria Bacteria 51.6 1.08e-6   NR WP_022849798.1 1304888 g261784 i0 73.3 3.06818181818182 30 8 51.1 0 85 174 1 30 WP_022849798.1 30S ribosomal protein S15 [Limisalsivibrio acetivorans] diamond 540 51.6 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Geovibrionaceae Limisalsivibrio Limisalsivibrio acetivorans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;