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contig_metadata

31 rows where analysis = "diamond", bioproject = "PRJNA641707" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 31 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA641707 · 31 ✖

analysis 1

  • diamond · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5717972 5717972 PRJNA641707_P_NODE_259165_length_178_cov_7.705426_g256502_i0 PRJNA641707 259165 178 7.705426 13.71565828 Chlamydiales bacterium 2047757 Bacteria Bacteria 80.9 3.44e-16   NR MDF2577259.1 2047757 g256502 i0 70.7 0.97752808988764 58 17 97.8 0 176 3 252 309 MDF2577259.1 waaC [Chlamydiales bacterium] diamond 174 80.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
22288589 22288589 PRJNA641707_P_NODE_132898_length_243_cov_10.726804_g130235_i0 PRJNA641707 132898 243 10.726804 26.06613372 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 80.9 1.33e-15   NR HEV8051562.1 2052176 g130235 i0 51.1 2.20987654320988 92 33 98.8 2 3 242 11 102 HEV8051562.1 protein kinase [Parachlamydiaceae bacterium] diamond 537 80.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
27365917 27365917 PRJNA641707_P_NODE_245783_length_184_cov_3.762963_g243120_i0 PRJNA641707 245783 184 3.762963 6.92385192 Chlamydia psittaci 83554 Bacteria Bacteria 108 5.0199999999999993e-29   NR EPJ33321.1 1112244 g243120 i0 98.3 0.96195652173913 59 1 96.2 0 8 184 52 110 EPJ33321.1 putative membrane protein [Chlamydia psittaci 06-1683] diamond 177 108 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
27428938 27428938 PRJNA641707_P_NODE_108723_length_246_cov_3.065990_g106060_i0 PRJNA641707 108723 246 3.06599 7.5423354 Chlamydiota bacterium 2081524 Bacteria Bacteria 58.9 7.64e-8   NR MCC6127993.1 2081524 g106060 i0 39 1 82 48 97.6 1 242 3 856 937 MCC6127993.1 ankyrin repeat domain-containing protein [Chlamydiota bacterium] diamond 246 58.9 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
27535986 27535986 PRJNA641707_P_NODE_95663_length_246_cov_4.837563_g93000_i0 PRJNA641707 95663 246 4.837563 11.90040498 Candidatus Protochlamydia 282132 Bacteria Bacteria 43.5 0.0206   NR WP_213105201.1 362787 g93000 i0 30.9 4.58536585365854 94 41 85.4 2 241 32 255 348 WP_213105201.1 ATP-dependent nuclease [Candidatus Protochlamydia amoebophila] diamond 1128 43.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia amoebophila
27681684 27681684 PRJNA641707_P_NODE_225764_length_191_cov_10.028169_g223101_i0 PRJNA641707 225764 191 10.028169 19.15380279 Candidatus Protochlamydia phocaeensis 1414722 Bacteria Bacteria 107 1.99e-28   NR WP_068468952.1 1414722 g223101 i0 89.5 1.83769633507853 57 6 89.5 0 16 186 3 59 WP_068468952.1 SWIB/MDM2 domain-containing protein [Candidatus Protochlamydia phocaeensis] diamond 351 107 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia phocaeensis
27681738 27681738 PRJNA641707_P_NODE_294324_length_166_cov_1.196581_g291661_i0 PRJNA641707 294324 166 1.196581 1.98632446 Simkania sp. 34094 Bacteria Bacteria 71.6 1.64e-14   NR MCB1084366.1 34094 g291661 i0 97.1 0.632530120481928 35 1 63.3 0 157 53 1 35 MCB1084366.1 hypothetical protein [Simkania sp.] diamond 105 71.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
27807910 27807910 PRJNA641707_P_NODE_270324_length_174_cov_4.120000_g267661_i0 PRJNA641707 270324 174 4.12 7.1688 Simkania sp. 34094 Bacteria Bacteria 53.9 4.99e-7   NR MCB1084326.1 34094 g267661 i0 72.7 0.568965517241379 33 9 56.9 0 168 70 65 97 MCB1084326.1 serine/threonine-protein kinase [Simkania sp.] diamond 99 53.9 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
27965423 27965423 PRJNA641707_P_NODE_191285_length_198_cov_16.335570_g188622_i0 PRJNA641707 191285 198 16.33557 32.3444286 Simkania sp. 34094 Bacteria Bacteria 81.6 3.07e-16   NR MBS3904087.1 34094 g188622 i0 52 1.54545454545455 102 10 95.5 1 8 196 259 360 MBS3904087.1 phospho-N-acetylmuramoyl-pentapeptide-transferase [Simkania sp.] diamond 306 81.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
28217836 28217836 PRJNA641707_P_NODE_198826_length_197_cov_11.722973_g196163_i0 PRJNA641707 198826 197 11.722973 23.09425681 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 66.6 7.41e-11   NR HNA62226.1 2047756 g196163 i0 96.9 0.487309644670051 32 1 48.7 0 99 4 132 163 HNA62226.1 type III secretion system ATPase SctN [Rhabdochlamydiaceae bacterium] diamond 96 66.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
28249638 28249638 PRJNA641707_P_NODE_61126_length_272_cov_3.869955_g58465_i0 PRJNA641707 61126 272 3.869955 10.5262776 Chlamydia psittaci 84-8471/1 1112230 Bacteria Bacteria 82.4 1.56e-17   NR EPP30166.1 1112230 g58465 i0 71.8 1.13602941176471 103 4 86 1 6 239 55 157 EPP30166.1 hypothetical protein CP8484711_2613, partial [Chlamydia psittaci 84-8471/1] diamond 309 82.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
28565489 28565489 PRJNA641707_P_NODE_3527_length_1070_cov_30.123408_g2512_i0 PRJNA641707 3527 1070 30.123408 322.3204656 Simkania sp. 34094 Bacteria Bacteria 256 1.36e-80   NR MCB1084310.1 34094 g2512 i0 75.9 0.476635514018692 170 41 47.7 0 764 255 1 170 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 510 256 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
29070854 29070854 PRJNA641707_P_NODE_283808_length_169_cov_2.841667_g281145_i0 PRJNA641707 283808 169 2.841667 4.80241723 Simkania sp. 34094 Bacteria Bacteria 86.3 1.2e-19   NR MCB1084326.1 34094 g281145 i0 84.1 0.781065088757396 44 7 78.1 0 23 154 50 93 MCB1084326.1 serine/threonine-protein kinase [Simkania sp.] diamond 132 86.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
29512430 29512430 PRJNA641707_P_NODE_15810_length_544_cov_19.101010_g13444_i0 PRJNA641707 15810 544 19.10101 103.9094944 Chlamydiales bacterium 2047757 Bacteria Bacteria 171 5.1700000000000003e-51   NR MCP5470421.1 2047757 g13444 i0 88.9 1.48897058823529 90 10 49.6 0 34 303 1 90 MCP5470421.1 hypothetical protein [Chlamydiales bacterium] diamond 810 171 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
29872431 29872431 PRJNA641707_P_NODE_244411_length_184_cov_10.614815_g241748_i0 PRJNA641707 244411 184 10.614815 19.5312596 Parachlamydia 83551 Bacteria Bacteria 41.6 0.031   NR MCE2983016.1 2052048 g241748 i0 72 1.33695652173913 25 7 40.8 0 5 79 132 156 MCE2983016.1 NADH-quinone oxidoreductase subunit NuoE [Parachlamydia sp.] diamond 246 42 0.990476190476191 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia sp.
30030452 30030452 PRJNA641707_P_NODE_84031_length_246_cov_6.979695_g81368_i0 PRJNA641707 84031 246 6.979695 17.1700497 Candidatus Neptunichlamydia 1891669 Bacteria Bacteria 56.2 6.96e-7   NR WP_194847642.1 1651774 g81368 i0 69.7 0.804878048780488 33 10 40.2 0 3 101 1595 1627 WP_194847642.1 tetratricopeptide repeat protein [Candidatus Neptunochlamydia vexilliferae] diamond 198 56.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Candidatus Neptunichlamydia Candidatus Neptunichlamydia vexilliferae
30365912 30365912 PRJNA641707_P_NODE_26772_length_419_cov_33.670270_g24180_i0 PRJNA641707 26772 419 33.67027 141.0784313 Chlamydiales bacterium 2047757 Bacteria Bacteria 222 8.579999999999999e-72   NR MCP5470421.1 2047757 g24180 i0 82.8 1.83293556085919 128 22 91.6 0 385 2 1 128 MCP5470421.1 hypothetical protein [Chlamydiales bacterium] diamond 768 222 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
30460733 30460733 PRJNA641707_P_NODE_289213_length_167_cov_4.813559_g286550_i0 PRJNA641707 289213 167 4.813559 8.03864353 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 52.4 5.26e-6   NR HEV8051063.1 2052176 g286550 i0 51.9 0.934131736526946 52 25 93.4 0 160 5 271 322 HEV8051063.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 156 52.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
30567119 30567119 PRJNA641707_P_NODE_267913_length_175_cov_3.817460_g265250_i0 PRJNA641707 267913 175 3.81746 6.680555 Chlamydiia 204429 Bacteria Bacteria 101 1.98e-24   NR MFI5343212.1 2047757 g265250 i0 86 2.91428571428571 57 8 97.7 0 3 173 66 122 MFI5343212.1 alpha/beta fold hydrolase [Chlamydiales bacterium] diamond 510 102 0.990196078431373 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31250206 31250206 PRJNA641707_P_NODE_325315_length_156_cov_3.177570_g322652_i0 PRJNA641707 325315 156 3.17757 4.9570092 Rhabdochlamydiaceae bacterium 2047756 Bacteria Bacteria 52.4 4.06e-6   NR MBX9922946.1 2047756 g322652 i0 65.8 0.730769230769231 38 13 73.1 0 149 36 45 82 MBX9922946.1 hypothetical protein [Rhabdochlamydiaceae bacterium] diamond 114 52.4 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Candidatus Rhabdochlamydiaceae   Rhabdochlamydiaceae bacterium
31345250 31345250 PRJNA641707_P_NODE_61816_length_270_cov_5.171946_g59155_i0 PRJNA641707 61816 270 5.171946 13.9642542 Chlamydia psittaci 83554 Bacteria Bacteria 44.7 0.00343   NR EPP29195.1 1112246 g59155 i0 93.3 0.333333333333333 30 2 33.3 0 2 91 18 47 EPP29195.1 putative membrane protein, partial [Chlamydia psittaci 08-2626_L3] diamond 90 44.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia psittaci
31439891 31439891 PRJNA641707_P_NODE_238576_length_187_cov_3.231884_g235913_i0 PRJNA641707 238576 187 3.231884 6.04362308 Chlamydiales bacterium 2047757 Bacteria Bacteria 43.1 0.013   NR MCP5469235.1 2047757 g235913 i0 35.8 0.850267379679144 53 32 85 1 161 3 107 157 MCP5469235.1 DUF3638 domain-containing protein [Chlamydiales bacterium] diamond 159 43.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31471724 31471724 PRJNA641707_P_NODE_15736_length_545_cov_33.641129_g13373_i0 PRJNA641707 15736 545 33.641129 183.34415305 Chlamydiales bacterium 2047757 Bacteria Bacteria 157 2.05e-45   NR MCP5470420.1 2047757 g13373 i0 61.9 0.809174311926605 147 54 80.9 1 32 472 1 145 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 441 157 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31471795 31471795 PRJNA641707_P_NODE_250916_length_182_cov_2.436090_g248253_i0 PRJNA641707 250916 182 2.43609 4.4336838 Chlamydiota bacterium 2081524 Bacteria Bacteria 52.4 1.95e-6   NR NNM43970.1 2081524 g248253 i0 55.8 1.41758241758242 43 19 70.9 0 14 142 88 130 NNM43970.1 uracil phosphoribosyltransferase [Chlamydiota bacterium] diamond 258 52.4 1 Bacteria PVC group Pseudomonadati Chlamydiota         Chlamydiota bacterium
31945813 31945813 PRJNA641707_P_NODE_116737_length_245_cov_18.290816_g114074_i0 PRJNA641707 116737 245 18.290816 44.8124992 Chlamydiales bacterium 2047757 Bacteria Bacteria 49.3 1.84e-4   NR MDP1835215.1 2047757 g114074 i0 56.7 0.36734693877551 30 13 36.7 0 96 7 312 341 MDP1835215.1 protein kinase [Chlamydiales bacterium] diamond 90 49.3 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
31977633 31977633 PRJNA641707_P_NODE_188298_length_199_cov_5.246667_g185635_i0 PRJNA641707 188298 199 5.246667 10.44086733 Simkania sp. 34094 Bacteria Bacteria 53.5 2.35e-7   NR MCB1084315.1 34094 g185635 i0 69.7 0.49748743718593 33 10 49.7 0 100 198 1 33 MCB1084315.1 hypothetical protein [Simkania sp.] diamond 99 53.5 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
32262730 32262730 PRJNA641707_P_NODE_168218_length_201_cov_14.361842_g165555_i0 PRJNA641707 168218 201 14.361842 28.86730242 Chlamydiales bacterium 2047757 Bacteria Bacteria 43.1 0.00948   NR MFT4552738.1 2047757 g165555 i0 53.1 0.970149253731343 32 15 47.8 0 192 97 13 44 MFT4552738.1 transposase [Chlamydiales bacterium] diamond 195 43.1 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium
32275104 32275104 PRJNA641707_P_NODE_99758_length_246_cov_4.258883_g97095_i0 PRJNA641707 99758 246 4.258883 10.47685218 Bacteria 2 Bacteria Bacteria 56.2 6.32e-7   NR CQB87295.1 813 g97095 i0 75 3.1219512195122 32 8 39 0 98 3 1 32 CQB87295.1 Uncharacterised protein [Chlamydia trachomatis] diamond 768 56.6 0.992932862190813 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Chlamydia Chlamydia trachomatis
32294593 32294593 PRJNA641707_P_NODE_6779_length_818_cov_7.729519_g5157_i0 PRJNA641707 6779 818 7.729519 63.22746542 Simkania sp. 34094 Bacteria Bacteria 260 2.28e-83   NR MCB1084310.1 34094 g5157 i0 75.9 0.623471882640587 170 41 62.3 0 513 4 1 170 MCB1084310.1 hypothetical protein [Simkania sp.] diamond 510 260 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Simkania Simkania sp.
32326170 32326170 PRJNA641707_P_NODE_274619_length_172_cov_6.487805_g271956_i0 PRJNA641707 274619 172 6.487805 11.1590246 Parachlamydiaceae bacterium 2052176 Bacteria Bacteria 41.6 0.00349   NR HEV8052964.1 2052176 g271956 i0 72.7 0.575581395348837 33 9 57.6 0 102 4 1 33 HEV8052964.1 hypothetical protein [Parachlamydiaceae bacterium] diamond 99 41.6 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   Parachlamydiaceae bacterium
32893519 32893519 PRJNA641707_P_NODE_16020_length_541_cov_23.953252_g13645_i0 PRJNA641707 16020 541 23.953252 129.58709332 Chlamydiales bacterium 2047757 Bacteria Bacteria 88.2 1.72e-18   NR MCP5470420.1 2047757 g13645 i0 53.6 0.621072088724584 112 50 62.1 1 410 75 36 145 MCP5470420.1 ribosomal protein L24e family protein [Chlamydiales bacterium] diamond 336 88.2 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales     Chlamydiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;