RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA641707" and tax_phylum = "Candidatus Absconditibacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Absconditibacteriota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA641707 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29449189 29449189 PRJNA641707_P_NODE_125330_length_245_cov_3.346939_g122667_i0 PRJNA641707 125330 245 3.346939 8.20000055 candidate division SR1 bacterium 2044938 Bacteria Bacteria 72 1.88e-12   NR MBB1557629.1 2044938 g122667 i0 100 0.808163265306122 33 0 40.4 0 100 2 525 557 MBB1557629.1 S-layer homology domain-containing protein [candidate division SR1 bacterium] diamond 198 72 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium
29765112 29765112 PRJNA641707_P_NODE_267651_length_175_cov_4.523810_g264988_i0 PRJNA641707 267651 175 4.52381 7.9166675 candidate division SR1 bacterium 2044938 Bacteria Bacteria 44.3 0.00439   NR MBB1578605.1 2044938 g264988 i0 45 2.05714285714286 60 29 96 2 2 169 178 237 MBB1578605.1 S-layer homology domain-containing protein [candidate division SR1 bacterium] diamond 360 44.3 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium
31376972 31376972 PRJNA641707_P_NODE_99316_length_246_cov_4.324873_g96653_i0 PRJNA641707 99316 246 4.324873 10.63918758 candidate division SR1 bacterium 2044938 Bacteria Bacteria 68.6 1.58e-11   NR MBB1557189.1 2044938 g96653 i0 100 0.390243902439024 32 0 39 0 240 145 217 248 MBB1557189.1 Ig-like domain-containing protein [candidate division SR1 bacterium] diamond 96 68.6 1 Bacteria Bacteria candidate phyla   Candidatus Absconditibacteriota         candidate division SR1 bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;