RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA641707" and tax_clade = "unclassified ssRNA positive-strand viruses"

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tax_superkingdom 1

tax_clade 1

  • unclassified ssRNA positive-strand viruses · 3 ✖

bioproject 1

  • PRJNA641707 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27429113 27429113 PRJNA641707_P_NODE_57063_length_283_cov_3.123932_g54402_i0 PRJNA641707 57063 283 3.123932 8.84072756 Astegopteryx formosana nege-like virus 1 2945981 Viruses Viruses 68.9 3.88e-11   NR URA30365.1 2945981 g54402 i0 70.2 0.996466431095406 47 14 49.8 0 144 4 1427 1473 URA30365.1 RNA-dependent RNA polymerase [Astegopteryx formosana nege-like virus 1] diamond 282 68.9 1 Viruses unclassified ssRNA positive-strand viruses           Negevirus Astegopteryx formosana nege-like virus 1
28060170 28060170 PRJNA641707_P_NODE_200405_length_197_cov_7.601351_g197742_i0 PRJNA641707 200405 197 7.601351 14.97466147 Indomegoura indica nege-like virus 1 2830222 Viruses Viruses 57 1.92e-7   NR QUE41594.1 2830222 g197742 i0 83.9 0.472081218274112 31 5 47.2 0 103 195 378 408 QUE41594.1 ORF1 [Indomegoura indica nege-like virus 1] diamond 93 57 1 Viruses unclassified ssRNA positive-strand viruses             Indomegoura indica nege-like virus 1
30934380 30934380 PRJNA641707_P_NODE_40074_length_344_cov_6.528814_g37433_i0 PRJNA641707 40074 344 6.528814 22.45912016 Astegopteryx formosana nege-like virus 1 2945981 Viruses Viruses 48.9 8.56e-4   NR URA30365.1 2945981 g37433 i0 67.7 0.270348837209302 31 10 27 0 99 7 1966 1996 URA30365.1 RNA-dependent RNA polymerase [Astegopteryx formosana nege-like virus 1] diamond 93 48.9 1 Viruses unclassified ssRNA positive-strand viruses           Negevirus Astegopteryx formosana nege-like virus 1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;