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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA641707" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 8 ✖

bioproject 1

  • PRJNA641707 · 8 ✖

analysis 1

  • diamond · 8 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
617168 617168 PRJNA641707_P_NODE_75741_length_246_cov_12.639594_g73078_i0 PRJNA641707 75741 246 12.639594 31.09340124 Pseudomonadati 3379134 Bacteria Bacteria 68.9 2.33e-11   NR KPK89046.1 1703399 g73078 i0 90.9 6.4390243902439 33 3 40.2 0 148 246 258 290 KPK89046.1 MAG: 3-hydroxypropionyl-CoA synthetase [Deltaproteobacteria bacterium SM23_61] diamond 1584 68.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium SM23_61
9545067 9545067 PRJNA641707_P_NODE_45588_length_321_cov_6.143382_g42937_i0 PRJNA641707 45588 321 6.143382 19.72025622 Deltaproteobacteria bacterium ADurb.Bin 2026735 Bacteria Bacteria 80.1 3.93e-16   NR OQC48611.1 1852864 g42937 i0 65 0.560747663551402 60 21 56.1 0 196 17 22 81 OQC48611.1 MAG: hypothetical protein BWX58_01114 [Deltaproteobacteria bacterium ADurb.Bin026] diamond 180 80.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium ADurb.Bin026
27554902 27554902 PRJNA641707_P_NODE_289524_length_167_cov_4.118644_g286861_i0 PRJNA641707 289524 167 4.118644 6.87813548 SAR324 cluster bacterium 2024889 Bacteria Bacteria 42.7 0.0093   NR NQU63746.1 2024889 g286861 i0 66.7 3.03592814371257 24 8 43.1 0 73 2 32 55 NQU63746.1 hypothetical protein [SAR324 cluster bacterium] diamond 507 42.7 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
27807801 27807801 PRJNA641707_P_NODE_111424_length_246_cov_2.675127_g108761_i0 PRJNA641707 111424 246 2.675127 6.58081242 Deltaproteobacteria bacterium CG_4_1 2026735 Bacteria Bacteria 54.3 1.11e-6   NR PIZ18913.1 1973958 g108761 i0 77.4 0.378048780487805 31 7 37.8 0 241 149 60 90 PIZ18913.1 MAG: hypothetical protein COY50_12800 [Deltaproteobacteria bacterium CG_4_10_14_0_8_um_filter_43_12] diamond 93 54.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG_4_10_14_0_8_um_filter_43_12
27934074 27934074 PRJNA641707_P_NODE_55805_length_286_cov_9.244726_g53144_i0 PRJNA641707 55805 286 9.244726 26.43991636 uncultured delta proteobacterium HF 34034 Bacteria Bacteria 53.5 3.09e-6   NR ADI19064.1 710825 g53144 i0 73.3 0.314685314685315 30 8 31.5 0 98 9 79 108 ADI19064.1 hypothetical protein [uncultured delta proteobacterium HF0070_15B21] diamond 90 53.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0070_15B21
29493450 29493450 PRJNA641707_P_NODE_191650_length_198_cov_13.248322_g188987_i0 PRJNA641707 191650 198 13.248322 26.23167756 delta/epsilon subdivisions 68525 Bacteria Bacteria 43.5 0.01   NR CAB5107135.1 426688 g188987 i0 34.4 7.21212121212121 64 37 89.4 1 21 197 87 150 CAB5107135.1 Long-chain-fatty-acid--CoA ligase (EC [Olavius algarvensis associated proteobacterium Delta 3] diamond 1428 43.9 0.990888382687927 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius algarvensis associated proteobacterium Delta 3
30334308 30334308 PRJNA641707_P_NODE_209092_length_195_cov_16.547945_g206429_i0 PRJNA641707 209092 195 16.547945 32.26849275 SAR324 cluster bacterium 2024889 Bacteria Bacteria 64.3 2.82e-10   NR MCZ6533069.1 2024889 g206429 i0 90.6 2.69230769230769 32 3 49.2 0 100 5 20 51 MCZ6533069.1 enoyl-CoA hydratase/isomerase family protein [SAR324 cluster bacterium] diamond 525 64.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
30997438 30997438 PRJNA641707_P_NODE_175254_length_200_cov_13.483444_g172591_i0 PRJNA641707 175254 200 13.483444 26.966888 uncultured delta proteobacterium Rifle_16ft_4_minimus_12842 1665174 Bacteria Bacteria 75.9 3.13e-14   NR AKQ00990.1 1665174 g172591 i0 58.8 1.71 68 26 99 1 200 3 173 240 AKQ00990.1 30S ribosomal protein S3, small subunit ribosomal protein S3 [uncultured delta proteobacterium Rifle_16ft_4_minimus_12842] diamond 342 75.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium Rifle_16ft_4_minimus_12842

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;