RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA641707" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA641707 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31610627 31610627 PRJNA641707_P_NODE_257316_length_179_cov_5.161538_g254653_i0 PRJNA641707 257316 179 5.161538 9.23915302 root 1 Root_unresolved Root_unresolved 65.9 1.1e-10   NR WP_407423815.1 66852 g254653 i0 68.9 6.7877094972067 45 13 75.4 1 136 2 528 571 WP_407423815.1 ABC transporter ATP-binding protein [Methanobrevibacter sp.] diamond 1215 65.9 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
31673654 31673654 PRJNA641707_P_NODE_228117_length_191_cov_1.873239_g225454_i0 PRJNA641707 228117 191 1.873239 3.57788649 root 1 Root_unresolved Root_unresolved 48.1 2.32e-4   NR WP_295592605.1 253161 g225454 i0 36.4 4.77486910994764 55 35 86.4 0 14 178 257 311 WP_295592605.1 tetratricopeptide repeat protein [uncultured Methanobrevibacter sp.] diamond 912 48.1 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter uncultured Methanobrevibacter sp.
32167714 32167714 PRJNA641707_P_NODE_139978_length_242_cov_3.145078_g137315_i0 PRJNA641707 139978 242 3.145078 7.61108876 Methanobacterium sp. 2164 Archaea Archaea 60.8 4.95e-9   NR MDD1775564.1 2164 g137315 i0 72.7 1.63636363636364 33 9 40.9 0 104 6 136 168 MDD1775564.1 cysteine peptidase family C39 domain-containing protein [Methanobacterium sp.] diamond 396 60.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;