RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA640350" and tax_phylum = "Bdellovibrionota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA640350 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5714089 5714089 PRJNA640350_P_NODE_33825_length_163_cov_1.798507_g33664_i0 PRJNA640350 33825 163 1.798507 2.93156641 Oligoflexus 1553903 Bacteria Bacteria 102 1.06e-23   NR WP_141736708.1 708132 g33664 i0 94.3 1.95092024539877 53 3 97.5 0 162 4 316 368 WP_141736708.1 F0F1 ATP synthase subunit beta [Oligoflexus tunisiensis] diamond 318 103 0.990291262135922 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus tunisiensis
26701026 26701026 PRJNA640350_P_NODE_35381_length_160_cov_1.396947_g35220_i0 PRJNA640350 35381 160 1.396947 2.2351152 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 92 5.21e-20   NR MES2527758.1 3034175 g35220 i0 92.5 0.99375 53 4 99.4 0 2 160 245 297 MES2527758.1 flagellar biosynthesis protein FlhA [Bdellovibrionota bacterium] diamond 159 92 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28660187 28660187 PRJNA640350_P_NODE_23327_length_199_cov_1.476471_g23166_i0 PRJNA640350 23327 199 1.476471 2.93817729 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 69.3 8.44e-12   NR MES2744261.1 3034175 g23166 i0 45.9 1.82412060301508 61 33 92 0 185 3 249 309 MES2744261.1 hypothetical protein [Bdellovibrionota bacterium] diamond 363 69.3 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
30143859 30143859 PRJNA640350_P_NODE_38872_length_154_cov_1.096000_g38711_i0 PRJNA640350 38872 154 1.096 1.68784 Oligoflexus sp. 1971216 Bacteria Bacteria 52.8 3.09e-6   NR WP_324959308.1 1971216 g38711 i0 47.9 0.935064935064935 48 25 93.5 0 3 146 70 117 WP_324959308.1 hypothetical protein [Oligoflexus sp.] diamond 144 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
30965880 30965880 PRJNA640350_P_NODE_38454_length_154_cov_2.648000_g38293_i0 PRJNA640350 38454 154 2.648 4.07792 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 92 4.31e-21   NR MES2744094.1 3034175 g38293 i0 94 0.974025974025974 50 3 97.4 0 152 3 43 92 MES2744094.1 ABC transporter permease [Bdellovibrionota bacterium] diamond 150 92 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31313328 31313328 PRJNA640350_P_NODE_34415_length_162_cov_1.368421_g34254_i0 PRJNA640350 34415 162 1.368421 2.21684202 Oligoflexus sp. 1971216 Bacteria Bacteria 105 6.81e-25   NR MBC7659016.1 1971216 g34254 i0 90.6 2.94444444444444 53 5 98.1 0 3 161 164 216 MBC7659016.1 peptide MFS transporter [Oligoflexus sp.] diamond 477 105 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.
31724464 31724464 PRJNA640350_P_NODE_26257_length_185_cov_1.538462_g26096_i0 PRJNA640350 26257 185 1.538462 2.8461547 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 122 1.13e-32   NR MES2744094.1 3034175 g26096 i0 98.4 0.989189189189189 61 1 98.9 0 185 3 165 225 MES2744094.1 ABC transporter permease [Bdellovibrionota bacterium] diamond 183 122 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31819347 31819347 PRJNA640350_P_NODE_14097_length_331_cov_1.420530_g13936_i0 PRJNA640350 14097 331 1.42053 4.7019543 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 55.8 2.56e-6   NR MBL7557378.1 2026715 g13936 i0 95.8 0.217522658610272 24 1 21.8 0 259 330 155 178 MBL7557378.1 alpha/beta fold hydrolase [Pseudobdellovibrionaceae bacterium] diamond 72 55.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
32811506 32811506 PRJNA640350_P_NODE_32520_length_166_cov_1.861314_g32359_i0 PRJNA640350 32520 166 1.861314 3.08978124 Pseudomonadati 3379134 Bacteria Bacteria 110 8.12e-30   NR MBC7658616.1 1971216 g32359 i0 90.6 2.87349397590361 53 5 95.8 0 3 161 54 106 MBC7658616.1 ribosome silencing factor [Oligoflexus sp.] diamond 477 110 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Oligoflexales Oligoflexaceae Oligoflexus Oligoflexus sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;