RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA640143" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA640143 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22286871 22286871 PRJNA640143_S_NODE_17198_length_211_cov_1.959770_g16988_i0 PRJNA640143 17198 211 1.95977 4.1351147 Verrucomicrobiales bacterium 2026801 Bacteria Bacteria 125 5.38e-32   NR MCC6234743.1 2026801 g16988 i0 85.7 0.995260663507109 70 10 99.5 0 211 2 219 288 MCC6234743.1 acyl-CoA carboxylase subunit beta [Verrucomicrobiales bacterium] diamond 210 125 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales     Verrucomicrobiales bacterium
30807754 30807754 PRJNA640143_S_NODE_30694_length_156_cov_1.310924_g30484_i0 PRJNA640143 30694 156 1.310924 2.04504144 Opitutaceae bacterium 2006848 Bacteria Bacteria 89.4 2.3e-19   NR MBP7140831.1 2006848 g30484 i0 67.3 2 52 17 100 0 1 156 310 361 MBP7140831.1 multicopper oxidase domain-containing protein [Opitutaceae bacterium] diamond 312 89.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
32483999 32483999 PRJNA640143_S_NODE_28959_length_162_cov_1.240000_g28749_i0 PRJNA640143 28959 162 1.24 2.0088 Prosthecobacter sp. 1965333 Bacteria Bacteria 39.7 0.0399   NR MFM7606245.1 1965333 g28749 i0 90 0.37037037037037 20 2 37 0 160 101 65 84 MFM7606245.1 hypothetical protein [Prosthecobacter sp.] diamond 60 39.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
32673061 32673061 PRJNA640143_S_NODE_7500_length_308_cov_2.509225_g7290_i0 PRJNA640143 7500 308 2.509225 7.728413 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 43.1 0.0469   NR MBU6300000.1 2026799 g7290 i0 45.6 0.555194805194805 57 26 50.6 1 81 236 32 88 MBU6300000.1 alpha/beta fold hydrolase [Verrucomicrobiota bacterium] diamond 171 43.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;