RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA640143" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA640143 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28533938 28533938 PRJNA640143_S_NODE_1567_length_591_cov_2.785199_g1436_i0 PRJNA640143 1567 591 2.785199 16.46052609 Schistocephalus solidus 70667 Platyhelminthes Platyhelminthes 127 3.3399999999999993e-31   NR VDL99111.1 70667 g1436 i0 49.1 1.66497461928934 114 56 56.9 1 3 338 252 365 VDL99111.1 unnamed protein product [Schistocephalus solidus] diamond 984 127 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Schistocephalus Schistocephalus solidus
29986238 29986238 PRJNA640143_S_NODE_14471_length_229_cov_2.020833_g14261_i0 PRJNA640143 14471 229 2.020833 4.62770757 Trichobilharzia regenti 157069 Platyhelminthes Platyhelminthes 43.5 0.016   NR CAH8862890.1 157069 g14261 i0 41.7 0.62882096069869 48 26 60.3 1 200 63 429 476 CAH8862890.1 unnamed protein product [Trichobilharzia regenti] diamond 144 43.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Trichobilharzia Trichobilharzia regenti

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;