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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA640143" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 9 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA640143 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18462243 18462243 PRJNA640143_S_NODE_4695_length_378_cov_4.442815_g4487_i0 PRJNA640143 4695 378 4.442815 16.7938407 Opisthokonta 33154 Chordata Chordata 99 1.5699999999999994e-23   NR XP_006115471.2 13735 g4487 i0 76.2 3.30952380952381 63 15 50 0 14 202 88 150 XP_006115471.2 60S ribosomal protein L39 [Pelodiscus sinensis] diamond 1251 99 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Trionychidae Pelodiscus Pelodiscus sinensis
26859867 26859867 PRJNA640143_S_NODE_18241_length_205_cov_2.440476_g18031_i0 PRJNA640143 18241 205 2.440476 5.0029758 Bos javanicus 9906 Chordata Chordata 48.1 2.89e-4   NR XP_061278402.1 9906 g18031 i0 57.9 0.55609756097561 38 16 55.6 0 123 10 133 170 XP_061278402.1 proto-oncogene vav isoform X2 [Bos javanicus] diamond 114 48.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bos Bos javanicus
27807772 27807772 PRJNA640143_S_NODE_29784_length_159_cov_1.524590_g29574_i0 PRJNA640143 29784 159 1.52459 2.4240981 Bubalus bubalis 89462 Chordata Chordata 54.3 1.01e-6   NR XP_044780257.1 89462 g29574 i0 70.3 0.69811320754717 37 11 69.8 0 147 37 483 519 XP_044780257.1 kelch-like protein 32 isoform X6 [Bubalus bubalis] diamond 111 54.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Bubalus Bubalus bubalis
28439171 28439171 PRJNA640143_S_NODE_11666_length_253_cov_7.629630_g11456_i0 PRJNA640143 11666 253 7.62963 19.3029639 Camelus ferus 419612 Chordata Chordata 64.3 7.79e-10   NR EPY73476.1 419612 g11456 i0 47.9 0.841897233201581 71 37 84.2 0 217 5 224 294 EPY73476.1 protein YIPF5-like protein [Camelus ferus] diamond 213 64.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Camelidae Camelus Camelus ferus
28988492 28988492 PRJNA640143_S_NODE_17868_length_207_cov_2.341176_g17658_i0 PRJNA640143 17868 207 2.341176 4.84623432 root 1 Root_unresolved Root_unresolved 139 1.22e-37   NR XP_036010302.1 10090 g17658 i0 100 25.6086956521739 68 0 98.6 0 206 3 81 148 XP_036010302.1 uncharacterized protein Gm53410 [Mus musculus] diamond 5301 139 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
29196929 29196929 PRJNA640143_S_NODE_30449_length_157_cov_1.191667_g30239_i0 PRJNA640143 30449 157 1.191667 1.87091719 Rangifer tarandus platyrhynchus 3082113 Chordata Chordata 42.4 0.00918   NR CAI9174469.1 3082113 g30239 i0 59.4 2.88535031847134 32 13 61.1 0 4 99 24 55 CAI9174469.1 unnamed protein product [Rangifer tarandus platyrhynchus] diamond 453 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Rangifer Rangifer tarandus
30870880 30870880 PRJNA640143_S_NODE_8334_length_294_cov_7.365759_g8124_i0 PRJNA640143 8334 294 7.365759 21.65533146 Ovis ammon polii 230172 Chordata Chordata 48.9 4.72e-4   NR KAI4540181.1 230172 g8124 i0 91.7 0.244897959183673 24 2 24.5 0 250 179 603 626 KAI4540181.1 hypothetical protein MG293_009222 [Ovis ammon polii] diamond 72 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Bovidae Ovis Ovis ammon
31009696 31009696 PRJNA640143_S_NODE_23894_length_180_cov_5.286713_g23684_i0 PRJNA640143 23894 180 5.286713 9.5160834 root 1 Root_unresolved Root_unresolved 113 2.6e-27   NR XP_029332929.1 10089 g23684 i0 95 32.9333333333333 60 3 100 0 180 1 1207 1266 XP_029332929.1 LOW QUALITY PROTEIN: uncharacterized protein LOC110295489 [Mus caroli] diamond 5928 114 0.991228070175439 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus caroli
32452487 32452487 PRJNA640143_S_NODE_10219_length_270_cov_1.364807_g10009_i0 PRJNA640143 10219 270 1.364807 3.6849789 Sousa chinensis 103600 Chordata Chordata 55.8 3.28e-8   NR TEA34510.1 103600 g10009 i0 67.5 0.866666666666667 40 13 44.4 0 124 243 12 51 TEA34510.1 hypothetical protein DBR06_SOUSAS10710064, partial [Sousa chinensis] diamond 234 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Sousa Sousa chinensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;