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contig_metadata

23 rows where analysis = "diamond", bioproject = "PRJNA640143" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 23 ✖

tax_kingdom 1

bioproject 1

  • PRJNA640143 · 23 ✖

analysis 1

  • diamond · 23 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10814088 10814088 PRJNA640143_S_NODE_21309_length_190_cov_13.137255_g21099_i0 PRJNA640143 21309 190 13.137255 24.9607845 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 80.9 4.84e-16   NR MFN0028796.1 2201156 g21099 i0 85.1 0.742105263157895 47 7 74.2 0 155 15 11 57 MFN0028796.1 molybdopterin-synthase adenylyltransferase MoeB [Acidimicrobiales bacterium] diamond 141 80.9 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
10814211 10814211 PRJNA640143_S_NODE_27009_length_169_cov_1.598485_g26799_i0 PRJNA640143 27009 169 1.598485 2.70143965 Microbacterium sp. NPDC 51671 Bacteria Bacteria 104 9.57e-27   NR WP_363360348.1 3155817 g26799 i0 94.2 0.923076923076923 52 3 92.3 0 14 169 1 52 WP_363360348.1 ribose-5-phosphate isomerase [Microbacterium sp. NPDC064584] diamond 156 104 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp. NPDC064584
22287055 22287055 PRJNA640143_S_NODE_25258_length_176_cov_1.000000_g25048_i0 PRJNA640143 25258 176 1 1.76 Aquipuribacter hungaricus 545624 Bacteria Bacteria 112 4.55e-28   NR WP_340292247.1 545624 g25048 i0 93.1 0.988636363636364 58 4 98.9 0 176 3 236 293 WP_340292247.1 thioredoxin-disulfide reductase [Aquipuribacter hungaricus] diamond 174 112 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Aquipuribacter Aquipuribacter hungaricus
26764474 26764474 PRJNA640143_S_NODE_20861_length_192_cov_5.935484_g20651_i0 PRJNA640143 20861 192 5.935484 11.39612928 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 92.4 5.77e-20   NR MCC6438575.1 2201156 g20651 i0 93.2 0.6875 44 3 68.8 0 158 27 69 112 MCC6438575.1 acyl-CoA dehydrogenase [Acidimicrobiales bacterium] diamond 132 92.4 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
26954276 26954276 PRJNA640143_S_NODE_22002_length_188_cov_0.986755_g21792_i0 PRJNA640143 22002 188 0.986755 1.8550994 Actinomycetota bacterium 2900548 Bacteria Bacteria 93.6 1.6e-20   NR MEY2848758.1 2900548 g21792 i0 86 0.797872340425532 50 7 79.8 0 1 150 64 113 MEY2848758.1 hypothetical protein [Actinomycetota bacterium] diamond 150 93.6 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
27030187 27030187 PRJNA640143_S_NODE_20062_length_196_cov_2.295597_g19852_i0 PRJNA640143 20062 196 2.295597 4.49937012 Streptomyces 1883 Bacteria Bacteria 42 0.0219   NR EFE84358.1 1886 g19852 i0 48.2 2.63265306122449 56 29 85.7 0 194 27 53 108 EFE84358.1 conserved hypothetical protein [Streptomyces albidoflavus] diamond 516 42.4 0.990566037735849 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces albidoflavus
27618255 27618255 PRJNA640143_S_NODE_5564_length_351_cov_9.216561_g5354_i0 PRJNA640143 5564 351 9.216561 32.35012911 Gaiella sp. 2663207 Bacteria Bacteria 162 1.8e-47   NR HET9937642.1 2663207 g5354 i0 92.6 0.803418803418803 94 7 80.3 0 33 314 164 257 HET9937642.1 hypothetical protein [Gaiella sp.] diamond 282 162 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Gaiellales Gaiellaceae Gaiella Gaiella sp.
28880943 28880943 PRJNA640143_S_NODE_13028_length_240_cov_7.211823_g12818_i0 PRJNA640143 13028 240 7.211823 17.3083752 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 70.1 7.94e-12   NR MFV0257242.1 2201156 g12818 i0 59.3 1.35 54 22 67.5 0 203 42 425 478 MFV0257242.1 D-alanyl-D-alanine carboxypeptidase family protein [Acidimicrobiales bacterium] diamond 324 70.1 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
29102181 29102181 PRJNA640143_S_NODE_24668_length_177_cov_378.521429_g24458_i0 PRJNA640143 24668 177 378.521429 669.98292933 Solirubrobacterales bacterium 1909295 Bacteria Bacteria 68.2 1.34e-11   NR HYQ13484.1 1909295 g24458 i0 71.7 8.38983050847458 46 13 78 0 175 38 176 221 HYQ13484.1 DUF1385 domain-containing protein [Solirubrobacterales bacterium] diamond 1485 68.2 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales     Solirubrobacterales bacterium
29272190 29272190 PRJNA640143_S_NODE_32429_length_151_cov_1.517544_g32219_i0 PRJNA640143 32429 151 1.517544 2.29149144 Bacillati 1783272 Bacteria Bacteria 47 3.25e-4   NR HYB30793.1 2586742 g32219 i0 43.8 4.78807947019868 48 27 95.4 0 146 3 214 261 HYB30793.1 sigma-70 family RNA polymerase sigma factor [Solirubrobacteraceae bacterium] diamond 723 47 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
29386380 29386380 PRJNA640143_S_NODE_23049_length_183_cov_10.301370_g22839_i0 PRJNA640143 23049 183 10.30137 18.8515071 Mycobacterium sp. 1785 Bacteria Bacteria 72.8 4.18e-13   NR MDT5081352.1 1785 g22839 i0 79.1 2.09836065573771 43 9 70.5 0 151 23 678 720 MDT5081352.1 hypothetical protein [Mycobacterium sp.] diamond 384 72.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp.
29493429 29493429 PRJNA640143_S_NODE_23810_length_181_cov_1.083333_g23600_i0 PRJNA640143 23810 181 1.083333 1.96083273 Aeromicrobium 2040 Bacteria Bacteria 69.3 4.8e-13   NR WP_297780780.1 1871063 g23600 i0 63 2.68508287292818 54 19 87.8 1 179 21 41 94 WP_297780780.1 DUF2550 domain-containing protein [Aeromicrobium sp.] diamond 486 69.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Aeromicrobium Aeromicrobium sp.
29638477 29638477 PRJNA640143_S_NODE_18690_length_203_cov_1.337349_g18480_i0 PRJNA640143 18690 203 1.337349 2.71481847 Arthrobacter sp. Soc17.1.1.1 3121277 Bacteria Bacteria 49.3 5.66e-5   NR WP_334211951.1 3121277 g18480 i0 73.5 0.502463054187192 34 9 50.2 0 201 100 68 101 WP_334211951.1 sigma-70 family RNA polymerase sigma factor [Arthrobacter sp. Soc17.1.1.1] diamond 102 49.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter Arthrobacter sp. Soc17.1.1.1
29923159 29923159 PRJNA640143_S_NODE_21711_length_189_cov_1.671053_g21501_i0 PRJNA640143 21711 189 1.671053 3.15829017 Actinomycetospora chlora 663608 Bacteria Bacteria 42.4 0.0099   NR WP_345425833.1 663608 g21501 i0 38.8 0.777777777777778 49 30 77.8 0 149 3 1 49 WP_345425833.1 hypothetical protein, partial [Actinomycetospora chlora] diamond 147 42.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinomycetospora Actinomycetospora chlora
30428942 30428942 PRJNA640143_S_NODE_21053_length_191_cov_344.928571_g20843_i0 PRJNA640143 21053 191 344.928571 658.81357061 uncultured Nocardioides sp. 198441 Bacteria Bacteria 47.4 3.71e-4   NR WP_298518960.1 198441 g20843 i0 60 0.628272251308901 40 16 62.8 0 130 11 3 42 WP_298518960.1 hypothetical protein [uncultured Nocardioides sp.] diamond 120 47.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Nocardioidaceae Nocardioides uncultured Nocardioides sp.
30472724 30472724 PRJNA640143_S_NODE_30353_length_157_cov_1.625000_g30143_i0 PRJNA640143 30353 157 1.625 2.55125 Microbacterium 33882 Bacteria Bacteria 97.8 1.8e-23   NR WP_378751246.1 323761 g30143 i0 90.4 5.96178343949045 52 5 99.4 0 2 157 36 87 WP_378751246.1 hypothetical protein [Microbacterium koreense] diamond 936 97.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium koreense
30618040 30618040 PRJNA640143_S_NODE_31313_length_154_cov_1.632479_g31103_i0 PRJNA640143 31313 154 1.632479 2.51401766 Microbacterium sp. 51671 Bacteria Bacteria 65.5 3.94e-11   NR WP_396643578.1 51671 g31103 i0 62 0.974025974025974 50 18 97.4 1 4 153 113 161 WP_396643578.1 hypothetical protein [Microbacterium sp.] diamond 150 65.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium sp.
30712884 30712884 PRJNA640143_S_NODE_17114_length_211_cov_9.850575_g16904_i0 PRJNA640143 17114 211 9.850575 20.78471325 unclassified Microbacterium 2609290 Bacteria Bacteria 84.7 1.36e-17   NR WP_405372898.1 2609290 g16904 i0 100 0.568720379146919 40 0 56.9 0 177 58 109 148 WP_405372898.1 MULTISPECIES: proteasome assembly chaperone family protein [unclassified Microbacterium] diamond 120 84.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium  
31503290 31503290 PRJNA640143_S_NODE_10876_length_262_cov_1.257778_g10666_i0 PRJNA640143 10876 262 1.257778 3.29537836 Microbacterium lacus 415217 Bacteria Bacteria 108 3.3299999999999998e-25   NR WP_404431579.1 415217 g10666 i0 93 0.652671755725191 57 4 65.3 0 261 91 645 701 WP_404431579.1 alpha-galactosidase [Microbacterium lacus] diamond 171 108 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Microbacterium Microbacterium lacus
31629680 31629680 PRJNA640143_S_NODE_19336_length_199_cov_8.339506_g19126_i0 PRJNA640143 19336 199 8.339506 16.59561694 Conexibacter sp. 1929289 Bacteria Bacteria 47 6.4e-4   NR HEY4281237.1 1929289 g19126 i0 59.5 0.633165829145729 42 17 63.3 0 146 21 12 53 HEY4281237.1 CoA transferase [Conexibacter sp.] diamond 126 47 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter sp.
32135932 32135932 PRJNA640143_S_NODE_11958_length_250_cov_11.244131_g11748_i0 PRJNA640143 11958 250 11.244131 28.1103275 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 94 3.82e-20   NR MEZ5263250.1 2201156 g11748 i0 100 1.764 49 0 58.8 0 216 70 166 214 MEZ5263250.1 dynamin family protein [Acidimicrobiales bacterium] diamond 441 94 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
32610232 32610232 PRJNA640143_S_NODE_21920_length_188_cov_2.006623_g21710_i0 PRJNA640143 21920 188 2.006623 3.77245124 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 42.4 0.0245   NR WKZ83440.1 2080302 g21710 i0 32.7 0.877659574468085 55 37 87.8 0 13 177 307 361 WKZ83440.1 MAG: AMP-binding protein [Acidimicrobiia bacterium] diamond 165 42.4 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
32736346 32736346 PRJNA640143_S_NODE_32440_length_151_cov_1.377193_g32230_i0 PRJNA640143 32440 151 1.377193 2.07956143 Mycobacterium sp. 1785 Bacteria Bacteria 96.7 5.02e-22   NR MBI2703540.1 1785 g32230 i0 100 0.973509933774834 49 0 97.4 0 3 149 201 249 MBI2703540.1 cytochrome P450 [Mycobacterium sp.] diamond 147 96.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycobacterium Mycobacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;