RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA640143" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA640143 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27586607 27586607 PRJNA640143_S_NODE_23484_length_182_cov_1.344828_g23274_i0 PRJNA640143 23484 182 1.344828 2.44758696 Fusobacterium polymorphum 76857 Bacteria Bacteria 58.2 5.93e-8   NR WP_005894580.1 76857 g23274 i0 93.3 1.97802197802198 60 4 98.9 0 180 1 35 94 WP_005894580.1 ribonuclease Y [Fusobacterium polymorphum] diamond 360 58.2 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
27618245 27618245 PRJNA640143_S_NODE_18204_length_205_cov_4.130952_g17994_i0 PRJNA640143 18204 205 4.130952 8.4684516 Fusobacteriaceae bacterium 2053555 Bacteria Bacteria 79 3.83e-15   NR BFO51840.1 2053555 g17994 i0 65.5 11.590243902439 58 20 84.9 0 29 202 155 212 BFO51840.1 uroporphyrinogen-III C-methyltransferase [Fusobacteriaceae bacterium] diamond 2376 79 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae   Fusobacteriaceae bacterium
29228606 29228606 PRJNA640143_S_NODE_30249_length_157_cov_2.275000_g30039_i0 PRJNA640143 30249 157 2.275 3.57175 Fusobacterium sp. 68766 Bacteria Bacteria 97.4 6.14e-23   NR MBF0992406.1 68766 g30039 i0 100 0.974522292993631 51 0 97.5 0 4 156 78 128 MBF0992406.1 SPFH/Band 7/PHB domain protein [Fusobacterium sp.] diamond 153 97.4 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium sp.
32830669 32830669 PRJNA640143_S_NODE_11020_length_260_cov_2.004484_g10810_i0 PRJNA640143 11020 260 2.004484 5.2116584 Leptotrichia sp. 104608 Bacteria Bacteria 140 1.83e-36   NR MBF1337357.1 104608 g10810 i0 83.5 0.980769230769231 85 14 98.1 0 260 6 676 760 MBF1337357.1 DEAD/DEAH box helicase family protein [Leptotrichia sp.] diamond 255 140 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;