RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA638724" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA638724 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4437306 4437306 PRJNA638724_P_NODE_4924_length_286_cov_1.314554_g4838_i0 PRJNA638724 4924 286 1.314554 3.75962444 Acinetobacter bereziniae 106648 Bacteria Bacteria 160 1.9099999999999998e-47   NR WP_333515275.1 106648 g4838 i0 91.2 0.954545454545455 91 8 95.5 0 274 2 11 101 WP_333515275.1 AAA family ATPase [Acinetobacter bereziniae] diamond 273 160 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Moraxellales Moraxellaceae Acinetobacter Acinetobacter bereziniae
27302380 27302380 PRJNA638724_P_NODE_7083_length_246_cov_0.890173_g6997_i0 PRJNA638724 7083 246 0.890173 2.18982558 Aquabacterium sp. G14 3130164 Bacteria Bacteria 130 9.329999999999998e-37   NR WP_339582258.1 3130164 g6997 i0 100 0.75609756097561 62 0 75.6 0 186 1 1 62 WP_339582258.1 AtaL-like protein [Aquabacterium sp. G14] diamond 186 130 1 Bacteria   Pseudomonadati Pseudomonadota Betaproteobacteria Burkholderiales   Aquabacterium Aquabacterium sp. G14
32230947 32230947 PRJNA638724_P_NODE_6878_length_248_cov_0.880000_g6792_i0 PRJNA638724 6878 248 0.88 2.1824 Bradyrhizobium sp. LHD-71 3072141 Bacteria Bacteria 47.4 8.96e-4   NR WP_308966524.1 3072141 g6792 i0 86.2 0.701612903225806 29 3 33.9 1 85 2 1 29 WP_308966524.1 serine hydrolase domain-containing protein [Bradyrhizobium sp. LHD-71] diamond 174 47.4 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Hyphomicrobiales Nitrobacteraceae Bradyrhizobium Bradyrhizobium sp. LHD-71

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;