RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA638724" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA638724 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27017708 27017708 PRJNA638724_P_NODE_1542_length_470_cov_2.518892_g1456_i0 PRJNA638724 1542 470 2.518892 11.8387924 Erpetoichthys calabaricus 27687 Chordata Chordata 145 4.57e-39   NR XP_051791274.1 27687 g1456 i0 60.3 6.3 141 28 89.4 2 51 470 115 228 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 2961 145 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
31029096 31029096 PRJNA638724_P_NODE_2515_length_381_cov_1.717532_g2429_i0 PRJNA638724 2515 381 1.717532 6.54379692 Balaenoptera physalus 9770 Chordata Chordata 43.5 0.0243   NR KAB0401909.1 9770 g2429 i0 53.2 0.37007874015748 47 18 35.4 2 224 90 13 57 KAB0401909.1 hypothetical protein E2I00_017869, partial [Balaenoptera physalus] diamond 141 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenopteridae Balaenoptera Balaenoptera physalus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;