RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA638724" and tax_phylum = "Candidatus Methanomethylicota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Methanomethylicota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA638724 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29480648 29480648 PRJNA638724_P_NODE_310_length_943_cov_2.941379_g247_i0 PRJNA638724 310 943 2.941379 27.73720397 Candidatus Methanomethylicaceae archaeon 2282146 Archaea Archaea 160 4.259999999999999e-42   NR MEM4721922.1 3058293 g247 i0 53.8 0.413573700954401 130 60 41.4 0 942 553 199 328 MEM4721922.1 hypothetical protein [Candidatus Methanomethylicaceae archaeon] diamond 390 160 1 Archaea   Thermoproteati Candidatus Methanomethylicota Candidatus Methanomethylicia Candidatus Methanomethylicales Candidatus Methanomethylicaceae   Candidatus Methanomethylicaceae archaeon
32893453 32893453 PRJNA638724_P_NODE_4500_length_297_cov_2.232143_g4414_i0 PRJNA638724 4500 297 2.232143 6.62946471 Candidatus Methanomethylicaceae archaeon 2282146 Archaea Archaea 73.2 1.21e-12   NR MEM4721922.1 3058293 g4414 i0 44.9 0.787878787878788 78 39 77.8 2 67 297 15 89 MEM4721922.1 hypothetical protein [Candidatus Methanomethylicaceae archaeon] diamond 234 73.2 1 Archaea   Thermoproteati Candidatus Methanomethylicota Candidatus Methanomethylicia Candidatus Methanomethylicales Candidatus Methanomethylicaceae   Candidatus Methanomethylicaceae archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;