RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA638724" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA638724 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26985990 26985990 PRJNA638724_P_NODE_6882_length_248_cov_0.880000_g6796_i0 PRJNA638724 6882 248 0.88 2.1824 Corynebacterium urealyticum 43771 Bacteria Bacteria 50.4 7.24e-5   NR WP_148813241.1 43771 g6796 i0 45.3 0.774193548387097 64 35 77.4 0 196 5 73 136 WP_148813241.1 C40 family peptidase [Corynebacterium urealyticum] diamond 192 50.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium urealyticum
29386375 29386375 PRJNA638724_P_NODE_5689_length_269_cov_1.295918_g5603_i0 PRJNA638724 5689 269 1.295918 3.48601942 Acidimicrobiia bacterium 2080302 Bacteria Bacteria 43.1 0.0379   NR HEY4607379.1 2080302 g5603 i0 30.6 0.947955390334573 85 49 94.8 2 262 8 711 785 HEY4607379.1 DUF655 domain-containing protein [Acidimicrobiia bacterium] diamond 255 43.1 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
31914326 31914326 PRJNA638724_P_NODE_6377_length_255_cov_2.120879_g6291_i0 PRJNA638724 6377 255 2.120879 5.40824145 Pseudonocardia sp. N23 1987376 Bacteria Bacteria 42.7 0.0449   NR WP_098957286.1 1987376 g6291 i0 33.3 0.811764705882353 69 40 81.2 2 240 34 811 873 WP_098957286.1 phosphoenolpyruvate carboxylase [Pseudonocardia sp. N23] diamond 207 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. N23
32072530 32072530 PRJNA638724_P_NODE_7498_length_241_cov_1.386905_g7412_i0 PRJNA638724 7498 241 1.386905 3.34244105 Ilumatobacter sp. 1967498 Bacteria Bacteria 43.1 0.0251   NR NKB41104.1 1967498 g7412 i0 34.4 0.759336099585062 61 38 73.4 1 44 220 11 71 NKB41104.1 hypothetical protein [Ilumatobacter sp.] diamond 183 43.1 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae Ilumatobacter Ilumatobacter sp.
32830667 32830667 PRJNA638724_P_NODE_6640_length_251_cov_0.865169_g6554_i0 PRJNA638724 6640 251 0.865169 2.17157419 Streptomyces mirabilis 68239 Bacteria Bacteria 40.8 0.0423   NR WP_256259314.1 68239 g6554 i0 36.3 0.956175298804781 80 43 87.3 4 247 29 5 83 WP_256259314.1 hypothetical protein [Streptomyces mirabilis] diamond 240 40.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces mirabilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;