RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA638724" and tax_kingdom = "Shotokuvirae"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Shotokuvirae · 2 ✖

bioproject 1

  • PRJNA638724 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26985989 26985989 PRJNA638724_P_NODE_4762_length_290_cov_1.958525_g4676_i0 PRJNA638724 4762 290 1.958525 5.6797225 Cressdnaviricota sp. 2748378 Viruses Viruses 67.4 1.08e-10   NR UOF82937.1 2748378 g4676 i0 57.1 0.579310344827586 56 24 57.9 0 1 168 257 312 UOF82937.1 rep protein [Cressdnaviricota sp.] diamond 168 67.4 1 Viruses   Shotokuvirae Cressdnaviricota         Cressdnaviricota sp.
31945785 31945785 PRJNA638724_P_NODE_3637_length_326_cov_1.213439_g3551_i0 PRJNA638724 3637 326 1.213439 3.95581114 Wigfec virus K19_346 2986007 Viruses Viruses 115 9.48e-29   NR UYD39114.1 2986007 g3551 i0 64.4 3.25766871165644 90 32 82.8 0 56 325 54 143 UYD39114.1 MAG: capsid protein [Wigfec virus K19_346] diamond 1062 115 1 Viruses   Shotokuvirae Cressdnaviricota         Wigfec virus K19_346

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;