RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA638724" and tax_clade = "FCB group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA638724 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29670029 29670029 PRJNA638724_P_NODE_6970_length_247_cov_0.885057_g6884_i0 PRJNA638724 6970 247 0.885057 2.18609079 Cellulophaga sp. BC115SP 2683263 Bacteria Bacteria 158 3.88e-44   NR WP_166550406.1 2683263 g6884 i0 97.5 0.97165991902834 80 2 97.2 0 242 3 200 279 WP_166550406.1 SusD/RagB family nutrient-binding outer membrane lipoprotein [Cellulophaga sp. BC115SP] diamond 240 158 1 Bacteria FCB group Pseudomonadati Bacteroidota Flavobacteriia Flavobacteriales Flavobacteriaceae Cellulophaga Cellulophaga sp. BC115SP
31756144 31756144 PRJNA638724_P_NODE_6877_length_248_cov_0.880000_g6791_i0 PRJNA638724 6877 248 0.88 2.1824 Prevotella sp. oral taxon 317 652721 Bacteria Bacteria 156 6.76e-44   NR WP_009229796.1 652721 g6791 i0 96.2 0.955645161290323 79 3 95.6 0 238 2 177 255 WP_009229796.1 imidazolonepropionase [Prevotella sp. oral taxon 317] diamond 237 156 1 Bacteria FCB group Pseudomonadati Bacteroidota Bacteroidia Bacteroidales Prevotellaceae Prevotella Prevotella sp. oral taxon 317

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;