RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA637328" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA637328 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27744663 27744663 PRJNA637328_S_NODE_3984_length_156_cov_1.033613_g3907_i0 PRJNA637328 3984 156 1.033613 1.61243628 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 40.8 0.0439   NR GIT06037.1 2026799 g3907 i0 50 0.769230769230769 40 18 76.9 1 19 138 29 66 GIT06037.1 MAG: hypothetical protein CM1200mP29_14480 [Verrucomicrobiota bacterium] diamond 120 40.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27870572 27870572 PRJNA637328_P_NODE_13505_length_266_cov_3.580645_g13029_i0 PRJNA637328 13505 266 3.580645 9.5245157 Opitutia bacterium 2026771 Bacteria Bacteria 119 3.71e-32   NR MEL0099990.1 2026771 g13029 i0 62.5 1.98496240601504 88 33 99.2 0 266 3 14 101 MEL0099990.1 hypothetical protein [Opitutia bacterium] diamond 528 119 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia       Opitutia bacterium
30365777 30365777 PRJNA637328_P_NODE_7112_length_334_cov_1.224561_g6637_i0 PRJNA637328 7112 334 1.224561 4.09003374 Opitutales bacterium 2026772 Bacteria Bacteria 44.7 0.0194   NR HNX04777.1 2026772 g6637 i0 42.6 0.94311377245509 54 20 45.8 2 57 209 14 59 HNX04777.1 prepilin peptidase [Opitutales bacterium] diamond 315 44.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales     Opitutales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;