RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA637328" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA637328 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30523281 30523281 PRJNA637328_S_NODE_3353_length_171_cov_1.440299_g3276_i0 PRJNA637328 3353 171 1.440299 2.46291129 Peronospora belbahrii 622444 SAR_Eukaryotes SAR_Eukaryotes 82 1.93e-16   NR CAH0476493.1 622444 g3276 i0 71.7 6.50877192982456 53 15 93 0 163 5 291 343 CAH0476493.1 unnamed protein product [Peronospora belbahrii] diamond 1113 82 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora belbahrii
32420649 32420649 PRJNA637328_P_NODE_9939_length_295_cov_3.447154_g9464_i0 PRJNA637328 9939 295 3.447154 10.1691043 Phytophthora megakarya 4795 SAR_Eukaryotes SAR_Eukaryotes 43.5 0.015   NR OWZ07851.1 4795 g9464 i0 44.2 0.43728813559322 43 24 43.7 0 142 270 33 75 OWZ07851.1 hypothetical protein PHMEG_00019699 [Phytophthora megakarya] diamond 129 43.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora megakarya

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;