RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA637328" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 5 ✖

tax_kingdom 1

bioproject 1

  • PRJNA637328 · 5 ✖

analysis 1

  • diamond · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26796224 26796224 PRJNA637328_P_NODE_14061_length_263_cov_3.672897_g13584_i0 PRJNA637328 14061 263 3.672897 9.65971911 Myxococcales bacterium 2026763 Bacteria Bacteria 100 1.86e-23   NR HEX4385098.1 2026763 g13584 i0 87 1.04942965779468 46 6 52.5 0 261 124 257 302 HEX4385098.1 AraC family transcriptional regulator [Myxococcales bacterium] diamond 276 100 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium
28072523 28072523 PRJNA637328_P_NODE_20705_length_229_cov_2.127778_g20228_i0 PRJNA637328 20705 229 2.127778 4.87261162 Pseudomonadati 3379134 Bacteria Bacteria 52.4 2.84e-6   NR MBT4089300.1 2026735 g20228 i0 31.7 4.51965065502183 63 41 79.9 1 30 212 5 67 MBT4089300.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 1035 52.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28754762 28754762 PRJNA637328_P_NODE_8327_length_317_cov_2.716418_g7852_i0 PRJNA637328 8327 317 2.716418 8.61104506 Myxococcota bacterium 2818507 Bacteria Bacteria 44.7 0.0181   NR MBU1534565.1 2818507 g7852 i0 32.9 0.747634069400631 79 51 74.8 1 247 11 402 478 MBU1534565.1 PilZ domain-containing protein [Myxococcota bacterium] diamond 237 44.7 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium
29417683 29417683 PRJNA637328_P_NODE_12569_length_272_cov_3.112108_g12093_i0 PRJNA637328 12569 272 3.112108 8.46493376 Kofleriaceae bacterium 2212474 Bacteria Bacteria 44.3 0.0106   NR MBP6628304.1 2212474 g12093 i0 34.1 1.00367647058824 91 50 98.2 3 2 268 116 198 MBP6628304.1 C-type lectin domain-containing protein [Kofleriaceae bacterium] diamond 273 44.3 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
31692844 31692844 PRJNA637328_P_NODE_16197_length_253_cov_1.926471_g15720_i0 PRJNA637328 16197 253 1.926471 4.87397163 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 44.3 0.0122   NR MBI5015527.1 2026735 g15720 i0 36.8 1.03162055335968 87 36 80.6 4 225 22 400 486 MBI5015527.1 phosphatase PAP2 family protein [Deltaproteobacteria bacterium] diamond 261 44.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;