RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA637328" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA637328 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1885200 1885200 PRJNA637328_P_NODE_17482_length_248_cov_1.025126_g17005_i0 PRJNA637328 17482 248 1.025126 2.54231248 Sulfurospirillum 57665 Bacteria Bacteria 132 1.4799999999999998e-37   NR MBE0492183.1 2053622 g17005 i0 79.3 2.9758064516129 82 17 99.2 0 246 1 30 111 MBE0492183.1 SsrA-binding protein SmpB [Sulfurospirillum sp.] diamond 738 132 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Sulfurospirillaceae Sulfurospirillum Sulfurospirillum sp.
30586362 30586362 PRJNA637328_P_NODE_7113_length_334_cov_1.077193_g6638_i0 PRJNA637328 7113 334 1.077193 3.59782462 Helicobacter pylori 210 Bacteria Bacteria 53.9 4.33e-7   NR GAA9125269.1 210 g6638 i0 100 0.206586826347305 23 0 20.7 0 73 5 1 23 GAA9125269.1 hypothetical protein Kyoto190A_0810 [Helicobacter pylori] diamond 69 53.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32464842 32464842 PRJNA637328_P_NODE_16099_length_253_cov_6.470588_g15622_i0 PRJNA637328 16099 253 6.470588 16.37058764 Bacteria 2 Bacteria Bacteria 68.6 1.32e-12   NR MDU9799813.1 210 g15622 i0 93.9 1.17391304347826 33 2 39.1 0 1 99 8 40 MDU9799813.1 hypothetical protein [Helicobacter pylori] diamond 297 68.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;