RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA637328" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA637328 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29954653 29954653 PRJNA637328_P_NODE_18671_length_243_cov_1.051546_g18194_i0 PRJNA637328 18671 243 1.051546 2.55525678 Bryobacteraceae bacterium 2212468 Bacteria Bacteria 53.9 1.56e-6   NR HSU60259.1 2212468 g18194 i0 69.2 2.37037037037037 39 12 48.1 0 118 2 111 149 HSU60259.1 glycosyltransferase [Bryobacteraceae bacterium] diamond 576 53.9 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales Bryobacteraceae   Bryobacteraceae bacterium
31060741 31060741 PRJNA637328_P_NODE_16435_length_252_cov_1.911330_g15958_i0 PRJNA637328 16435 252 1.91133 4.8165516 Kocuria sp. cx-455 2771377 Bacteria Bacteria 157 5.08e-44   NR WP_190807549.1 2771377 g15958 i0 92.8 1.97619047619048 83 6 98.8 0 2 250 117 199 WP_190807549.1 dipeptidase [Kocuria sp. cx-455] diamond 498 157 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Terriglobales Candidatus Korobacteraceae Candidatus Sulfotelmatobacter Kocuria sp. cx-455
32515756 32515756 PRJNA637328_P_NODE_10499_length_290_cov_1.485477_g10024_i0 PRJNA637328 10499 290 1.485477 4.3078833 Acidobacteriota bacterium 1978231 Bacteria Bacteria 119 1.59e-32   NR MEO8647848.1 1978231 g10024 i0 67.5 0.796551724137931 77 25 79.7 0 2 232 35 111 MEO8647848.1 metalloregulator ArsR/SmtB family transcription factor [Acidobacteriota bacterium] diamond 231 119 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;