RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA637328" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 2 ✖

bioproject 1

  • PRJNA637328 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27504467 27504467 PRJNA637328_P_NODE_13443_length_267_cov_0.935780_g12967_i0 PRJNA637328 13443 267 0.93578 2.4985326 Synergistales 649776 Bacteria Bacteria 181 4.79e-53   NR WP_290681816.1 1872489 g12967 i0 100 3 89 0 100 0 1 267 320 408 WP_290681816.1 hypothetical protein [Aminivibrio sp.] diamond 801 181 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminivibrio Aminivibrio sp.
32040932 32040932 PRJNA637328_P_NODE_15198_length_258_cov_0.976077_g14721_i0 PRJNA637328 15198 258 0.976077 2.51827866 Aminivibrio sp. 1872489 Bacteria Bacteria 102 2.14e-24   NR WP_290684787.1 1872489 g14721 i0 100 0.604651162790698 52 0 60.5 0 157 2 1 52 WP_290684787.1 methyl-accepting chemotaxis protein [Aminivibrio sp.] diamond 156 102 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Aminivibrio Aminivibrio sp.

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;