RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA637219" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 6 ✖

bioproject 1

  • PRJNA637219 · 6 ✖

analysis 1

  • diamond · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28672611 28672611 PRJNA637219_S_NODE_1827_length_331_cov_1.446809_g1782_i0 PRJNA637219 1827 331 1.446809 4.78893779 Gammaretrovirus 153135 Viruses Viruses 201 2.72e-57   NR NP_040333.1 11795 g1782 i0 93.6 9.96978851963746 110 7 99.7 0 331 2 645 754 NP_040333.1 RNA-dependent DNA polymerase, partial [Friend murine leukemia virus] diamond 3300 203 0.990147783251232 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
28754755 28754755 PRJNA637219_S_NODE_14567_length_163_cov_0.894737_g14522_i0 PRJNA637219 14567 163 0.894737 1.45842131 Arthrobacter phage Beagle 2656522 Viruses Viruses 39.7 0.0187   NR QGJ92786.1 2656522 g14522 i0 46.5 0.791411042944785 43 21 77.3 2 1 126 6 47 QGJ92786.1 hypothetical protein PBI_BEAGLE_26 [Arthrobacter phage Beagle] diamond 129 39.7 1 Viruses   Heunggongvirae Uroviricota Caudoviricetes       Arthrobacter phage Beagle
30409774 30409774 PRJNA637219_S_NODE_10773_length_167_cov_0.864407_g10728_i0 PRJNA637219 10773 167 0.864407 1.44355969 Picornavirales 464095 Viruses Viruses 82 1.88e-16   NR URG14647.1 1530251 g10728 i0 61.8 16.7784431137725 55 21 98.8 0 3 167 408 462 URG14647.1 MAG: RNA dependent RNA polymerase, partial [Picornaviridae sp.] diamond 2802 82.8 0.990338164251208 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Picornaviridae sp.
31471661 31471661 PRJNA637219_S_NODE_1336_length_378_cov_1.802432_g1291_i0 PRJNA637219 1336 378 1.802432 6.81319296 Moloney murine leukemia virus 11801 Viruses Viruses 254 1.87e-75   NR NP_057933.2 11801 g1291 i0 100 4.88095238095238 123 0 97.6 0 9 377 1055 1177 NP_057933.2 Pr180 [Moloney murine leukemia virus] diamond 1845 254 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
31641955 31641955 PRJNA637219_S_NODE_3476_length_254_cov_1.439024_g3431_i0 PRJNA637219 3476 254 1.439024 3.65512096 Cripavirus 144051 Viruses Viruses 100 2.0600000000000001e-22   NR NP_044946.1 64279 g3431 i0 53 17.6338582677165 83 39 98 0 252 4 85 167 NP_044946.1 capsid polyprotein, partial [Drosophila C virus] diamond 4479 100 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae Cripavirus Cripavirus drosophilae
32104132 32104132 PRJNA637219_S_NODE_16238_length_162_cov_0.902655_g16193_i0 PRJNA637219 16238 162 0.902655 1.4623011 Indivirus ILV1 1977633 Viruses Viruses 59.7 5.32e-9   NR ARF09964.1 1977633 g16193 i0 53.3 1.66666666666667 45 21 83.3 0 22 156 60 104 ARF09964.1 Ras family GTPase [Indivirus ILV1] diamond 270 59.7 1 Viruses   Bamfordvirae Nucleocytoviricota Megaviricetes Imitervirales Mimiviridae Indivirus Indivirus ILV1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;