RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA637219" and tax_phylum = "Rotifera"

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tax_superkingdom 1

tax_phylum 1

  • Rotifera · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA637219 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22285872 22285872 PRJNA637219_S_NODE_15598_length_162_cov_0.902655_g15553_i0 PRJNA637219 15598 162 0.902655 1.4623011 Rotaria 231623 Rotifera other_Eukaryota 73.6 1.03e-13   NR CAF1188218.1 2762511 g15553 i0 91.7 4.66666666666667 36 3 66.7 0 1 108 278 313 CAF1188218.1 unnamed protein product [Rotaria sp. Silwood1] diamond 756 73.6 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Philodinida Philodinidae Rotaria Rotaria sp. Silwood1
28533924 28533924 PRJNA637219_S_NODE_6607_length_199_cov_1.113333_g6562_i0 PRJNA637219 6607 199 1.113333 2.21553267 Brachionus plicatilis 10195 Rotifera other_Eukaryota 64.3 2.27e-10   NR RNA00284.1 10195 g6562 i0 56.1 0.994974874371859 66 29 99.5 0 2 199 99 164 RNA00284.1 beta [Brachionus plicatilis] diamond 198 64.3 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis
29051591 29051591 PRJNA637219_S_NODE_3988_length_240_cov_1.869110_g3943_i0 PRJNA637219 3988 240 1.86911 4.485864 Brachionus 10194 Rotifera other_Eukaryota 69.3 6.67e-12   NR AOP18532.1 96890 g3943 i0 63.6 2.7625 55 20 68.8 0 76 240 32 86 AOP18532.1 cytochrome c oxidase subunit III [Brachionus rotundiformis] diamond 663 69.7 0.994261119081779 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus rotundiformis
29904038 29904038 PRJNA637219_S_NODE_871_length_453_cov_3.787129_g826_i0 PRJNA637219 871 453 3.787129 17.15569437 Ploima 84394 Rotifera other_Eukaryota 169 9.02e-50   NR UBY46733.1 104777 g826 i0 73.4 5.05298013245033 109 29 72.2 0 7 333 6 114 UBY46733.1 cytochrome c oxidase subunit II [Brachionus calyciflorus] diamond 2289 169 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus calyciflorus
31819320 31819320 PRJNA637219_S_NODE_4977_length_220_cov_1.789474_g4932_i0 PRJNA637219 4977 220 1.789474 3.9368428 Proales similis 360698 Rotifera other_Eukaryota 79.3 3.89e-16   NR QKV49096.1 360698 g4932 i0 52.1 0.995454545454545 73 35 99.5 0 219 1 83 155 QKV49096.1 ATP synthase F0 subunit 6 [Proales similis] diamond 219 79.3 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Proalidae Proales Proales similis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;