RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "diamond", bioproject = "PRJNA637219" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA637219 · 7 ✖

analysis 1

  • diamond · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27270588 27270588 PRJNA637219_S_NODE_12003_length_166_cov_0.871795_g11958_i0 PRJNA637219 12003 166 0.871795 1.4471797 Myxococcaceae bacterium 2484252 Bacteria Bacteria 86.3 3.36e-18   NR RYZ12068.1 2484252 g11958 i0 72.7 1.95180722891566 55 15 99.4 0 1 165 142 196 RYZ12068.1 MAG: hypothetical protein EOO70_09315, partial [Myxococcaceae bacterium] diamond 324 86.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
27554692 27554692 PRJNA637219_S_NODE_11584_length_166_cov_0.871795_g11539_i0 PRJNA637219 11584 166 0.871795 1.4471797 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 40.4 0.032   NR MBL7684856.1 2026735 g11539 i0 40.9 0.795180722891566 44 22 72.3 1 46 165 34 77 MBL7684856.1 ATP/GTP-binding protein [Deltaproteobacteria bacterium] diamond 132 40.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28470711 28470711 PRJNA637219_S_NODE_13926_length_164_cov_0.886957_g13881_i0 PRJNA637219 13926 164 0.886957 1.45460948 Kofleriaceae bacterium 2212474 Bacteria Bacteria 82.8 1.83e-18   NR HUS28609.1 2212474 g13881 i0 72.2 7.31707317073171 54 15 98.8 0 2 163 86 139 HUS28609.1 VOC family protein [Kofleriaceae bacterium] diamond 1200 82.8 1 Bacteria   Pseudomonadati Myxococcota   Haliangiales Kofleriaceae   Kofleriaceae bacterium
30649461 30649461 PRJNA637219_S_NODE_4153_length_236_cov_1.090909_g4108_i0 PRJNA637219 4153 236 1.090909 2.57454524 Myxococcaceae bacterium 2484252 Bacteria Bacteria 45.4 0.00368   NR MBH2006686.1 2484252 g4108 i0 34.8 0.838983050847458 66 40 80.1 2 217 29 323 388 MBH2006686.1 hypothetical protein [Myxococcaceae bacterium] diamond 198 45.4 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae   Myxococcaceae bacterium
30934162 30934162 PRJNA637219_S_NODE_5074_length_219_cov_0.894118_g5029_i0 PRJNA637219 5074 219 0.894118 1.95811842 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 81.3 3.91e-18   NR MBN2340741.1 2026735 g5029 i0 57.1 2.86301369863014 70 30 95.9 0 211 2 8 77 MBN2340741.1 30S ribosomal protein S15 [Deltaproteobacteria bacterium] diamond 627 81.3 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
31515853 31515853 PRJNA637219_S_NODE_11276_length_167_cov_0.864407_g11231_i0 PRJNA637219 11276 167 0.864407 1.44355969 Bacteria 2 Bacteria Bacteria 70.1 2.99e-12   NR MBA3820321.1 2026735 g11231 i0 58.2 2.96407185628743 55 23 98.8 0 3 167 34 88 MBA3820321.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 495 70.1 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
32622538 32622538 PRJNA637219_S_NODE_14200_length_164_cov_0.886957_g14155_i0 PRJNA637219 14200 164 0.886957 1.45460948 Bacteria 2 Bacteria Bacteria 77.4 7.58e-15   NR MDF3064676.1 2268199 g14155 i0 64.8 4.84756097560976 54 19 98.8 0 163 2 52 105 MDF3064676.1 glycosyl hydrolase family 9 [Polyangiaceae bacterium] diamond 795 77.8 0.994858611825193 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;