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contig_metadata

33 rows where analysis = "diamond", bioproject = "PRJNA637219" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 33 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA637219 · 33 ✖

analysis 1

  • diamond · 33 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26872326 26872326 PRJNA637219_S_NODE_981_length_430_cov_1.102362_g936_i0 PRJNA637219 981 430 1.102362 4.7401566 Chordata 7711 Chordata Chordata 84.7 5.87e-16   NR KAF6422251.1 9407 g936 i0 49 21.153488372093 98 50 68.4 0 100 393 360 457 KAF6422251.1 eukaryotic translation elongation factor 1 alpha 2 [Rousettus aegyptiacus] diamond 9096 85.1 0.995299647473561 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
26922839 26922839 PRJNA637219_S_NODE_4362_length_232_cov_1.076503_g4317_i0 PRJNA637219 4362 232 1.076503 2.49748696 Rattus rattus 10117 Chordata Chordata 43.1 0.00787   NR XP_032751016.1 10117 g4317 i0 60 0.581896551724138 45 18 58.2 0 2 136 39 83 XP_032751016.1 60S acidic ribosomal protein P0-like [Rattus rattus] diamond 135 43.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus rattus
26935223 26935223 PRJNA637219_S_NODE_17382_length_161_cov_0.901786_g17337_i0 PRJNA637219 17382 161 0.901786 1.45187546 Cricetidae 337677 Chordata Chordata 44.3 0.00159   NR OBS59796.1 56216 g17337 i0 57.1 1.95652173913043 35 15 65.2 0 1 105 107 141 OBS59796.1 hypothetical protein A6R68_09074 [Neotoma lepida] diamond 315 44.3 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Neotoma Neotoma lepida
26966854 26966854 PRJNA637219_S_NODE_11122_length_167_cov_0.864407_g11077_i0 PRJNA637219 11122 167 0.864407 1.44355969 Chordata 7711 Chordata Chordata 80.1 3.81e-16   NR KAJ1119051.1 8319 g11077 i0 81.8 58.2934131736527 55 10 98.8 0 166 2 252 306 KAJ1119051.1 hypothetical protein NDU88_007237 [Pleurodeles waltl] diamond 9735 80.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
27049494 27049494 PRJNA637219_S_NODE_3862_length_243_cov_1.134021_g3817_i0 PRJNA637219 3862 243 1.134021 2.75567103 Alligator sinensis 38654 Chordata Chordata 51.2 3.74e-5   NR XP_006021319.1 38654 g3817 i0 53.6 2.07407407407407 56 26 69.1 0 1 168 321 376 XP_006021319.1 beta-actin-like protein 2 isoform X1 [Alligator sinensis] diamond 504 51.2 1 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator sinensis
27441372 27441372 PRJNA637219_S_NODE_15523_length_162_cov_0.911504_g15478_i0 PRJNA637219 15523 162 0.911504 1.47663648 Chordata 7711 Chordata Chordata 72.4 2.84e-13   NR WFS79080.1 9643 g15478 i0 89.7 291.055555555556 39 4 72.2 0 117 1 187 225 WFS79080.1 NADH dehydrogenase subunit 1 [Ursus americanus] diamond 47151 72.8 0.994505494505495 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Ursidae Ursus Ursus americanus
27776145 27776145 PRJNA637219_S_NODE_9744_length_172_cov_0.918699_g9699_i0 PRJNA637219 9744 172 0.918699 1.58016228 Arvicanthis niloticus 61156 Chordata Chordata 48.9 3.39e-5   NR XP_034347883.1 61156 g9699 i0 39.3 0.976744186046512 56 34 97.7 0 3 170 30 85 XP_034347883.1 60S ribosomal protein L27a-like [Arvicanthis niloticus] diamond 168 48.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Arvicanthis Arvicanthis niloticus
27807750 27807750 PRJNA637219_S_NODE_8924_length_178_cov_0.837209_g8879_i0 PRJNA637219 8924 178 0.837209 1.49023202 Podarcis raffonei 65483 Chordata Chordata 47.4 1.23e-4   NR XP_053225893.1 65483 g8879 i0 69 0.707865168539326 42 13 70.8 0 176 51 92 133 XP_053225893.1 40S ribosomal protein S15-like [Podarcis raffonei] diamond 126 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Podarcis Podarcis raffonei
27914566 27914566 PRJNA637219_S_NODE_12345_length_165_cov_1.491379_g12300_i0 PRJNA637219 12345 165 1.491379 2.46077535 Polypteridae 8289 Chordata Chordata 48.1 1.52e-4   NR XP_028671395.1 27687 g12300 i0 68 13.6363636363636 50 16 90.9 0 160 11 89 138 XP_028671395.1 40S ribosomal protein SA isoform X1 [Erpetoichthys calabaricus] diamond 2250 48.5 0.991752577319588 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
27977816 27977816 PRJNA637219_S_NODE_1325_length_379_cov_1.960606_g1280_i0 PRJNA637219 1325 379 1.960606 7.43069674 root 1 Root_unresolved Root_unresolved 268 3.94e-85   NR XP_030110853.2 10090 g1280 i0 100 13.9630606860158 126 0 99.7 0 378 1 201 326 XP_030110853.2 uncharacterized protein Gm42427, partial [Mus musculus] diamond 5292 268 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
28028667 28028667 PRJNA637219_S_NODE_2985_length_270_cov_0.981900_g2940_i0 PRJNA637219 2985 270 0.9819 2.65113 Prionailurus bengalensis 37029 Chordata Chordata 53.5 6.79e-6   NR XP_043428143.1 37029 g2940 i0 36.9 0.933333333333333 84 53 93.3 0 2 253 181 264 XP_043428143.1 40S ribosomal protein S6-like [Prionailurus bengalensis] diamond 252 53.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Carnivora Felidae Prionailurus Prionailurus bengalensis
28123290 28123290 PRJNA637219_S_NODE_16125_length_162_cov_0.902655_g16080_i0 PRJNA637219 16125 162 0.902655 1.4623011 Polypterus senegalus 55291 Chordata Chordata 46.2 7.32e-4   NR KAG2466703.1 55291 g16080 i0 58.3 70.6666666666667 36 15 66.7 0 160 53 138 173 KAG2466703.1 METK2 synthase, partial [Polypterus senegalus] diamond 11448 46.2 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
28483099 28483099 PRJNA637219_S_NODE_2886_length_274_cov_1.582222_g2841_i0 PRJNA637219 2886 274 1.582222 4.33528828 Rodentia 9989 Chordata Chordata 109 2.97e-26   NR XP_063138723.1 10116 g2841 i0 80.6 2.71532846715328 62 12 67.9 0 219 34 293 354 XP_063138723.1 uncharacterized protein LOC134485540 [Rattus norvegicus] diamond 744 110 0.990909090909091 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
28754754 28754754 PRJNA637219_S_NODE_14147_length_164_cov_0.886957_g14102_i0 PRJNA637219 14147 164 0.886957 1.45460948 Rousettus aegyptiacus 9407 Chordata Chordata 70.1 2.42e-13   NR KAF6495945.1 9407 g14102 i0 63 0.98780487804878 54 20 98.8 0 163 2 52 105 KAF6495945.1 hypothetical protein HJG63_010245 [Rousettus aegyptiacus] diamond 162 70.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
29070684 29070684 PRJNA637219_S_NODE_10648_length_167_cov_0.864407_g10603_i0 PRJNA637219 10648 167 0.864407 1.44355969 Eschrichtius robustus 9764 Chordata Chordata 56.2 2.1e-7   NR KAJ8785707.1 9764 g10603 i0 57.7 3.73652694610778 52 22 93.4 0 156 1 39 90 KAJ8785707.1 hypothetical protein J1605_006970 [Eschrichtius robustus] diamond 624 56.2 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Eschrichtiidae Eschrichtius Eschrichtius robustus
29102151 29102151 PRJNA637219_S_NODE_5128_length_218_cov_1.005917_g5083_i0 PRJNA637219 5128 218 1.005917 2.19289906 Polypterus senegalus 55291 Chordata Chordata 42.7 0.0273   NR KAG2466518.1 55291 g5083 i0 52.1 4.63761467889908 71 34 97.7 0 1 213 254 324 KAG2466518.1 PLIN2 protein, partial [Polypterus senegalus] diamond 1011 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
29480637 29480637 PRJNA637219_S_NODE_3830_length_244_cov_0.933333_g3785_i0 PRJNA637219 3830 244 0.933333 2.27733252 Camelus dromedarius 9838 Chordata Chordata 51.6 2.28e-5   NR KAB1253667.1 9838 g3785 i0 47.5 5.59426229508197 59 31 72.5 0 229 53 65 123 KAB1253667.1 60S ribosomal protein L7a [Camelus dromedarius] diamond 1365 51.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Camelidae Camelus Camelus dromedarius
30112488 30112488 PRJNA637219_S_NODE_17392_length_161_cov_0.883929_g17347_i0 PRJNA637219 17392 161 0.883929 1.42312569 Muntiacus muntjak 9888 Chordata Chordata 53.5 1.87e-6   NR KAB0342328.1 9888 g17347 i0 56.8 9.61490683229814 44 19 82 0 133 2 8 51 KAB0342328.1 hypothetical protein FD754_019254 [Muntiacus muntjak] diamond 1548 53.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus muntjak
30143819 30143819 PRJNA637219_S_NODE_16552_length_161_cov_0.937500_g16507_i0 PRJNA637219 16552 161 0.9375 1.509375 Choloepus didactylus 27675 Chordata Chordata 46.6 3.42e-4   NR XP_037697534.1 27675 g16507 i0 56 10.4534161490683 50 22 93.2 0 2 151 4 53 XP_037697534.1 60S ribosomal protein L17-like [Choloepus didactylus] diamond 1683 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pilosa Megalonychidae Choloepus Choloepus didactylus
30219770 30219770 PRJNA637219_S_NODE_6192_length_204_cov_0.825806_g6147_i0 PRJNA637219 6192 204 0.825806 1.68464424 Amphibia 8292 Chordata Chordata 51.2 1.81e-5   NR KAJ1101925.1 8319 g6147 i0 49.1 10.8970588235294 57 29 83.8 0 1 171 168 224 KAJ1101925.1 hypothetical protein NDU88_006987 [Pleurodeles waltl] diamond 2223 51.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
30283462 30283462 PRJNA637219_S_NODE_9552_length_173_cov_1.233871_g9507_i0 PRJNA637219 9552 173 1.233871 2.13459683 Metazoa 33208 Chordata Chordata 50.1 1.47e-5   NR AAA37165.1 10092 g9507 i0 54.9 16.8728323699422 51 23 88.4 0 21 173 7 57 AAA37165.1 alpha-cardiac actin, partial [Mus musculus domesticus] diamond 2919 50.4 0.994047619047619 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Mus Mus musculus
30523278 30523278 PRJNA637219_S_NODE_6233_length_203_cov_1.344156_g6188_i0 PRJNA637219 6233 203 1.344156 2.72863668 Trichechus manatus latirostris 127582 Chordata Chordata 55.8 1.85e-7   NR XP_023583309.1 127582 g6188 i0 53.2 7.33004926108374 62 29 91.6 0 17 202 66 127 XP_023583309.1 60S ribosomal protein L13a-like [Trichechus manatus latirostris] diamond 1488 55.8 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Sirenia Trichechidae Trichechus Trichechus manatus
30776209 30776209 PRJNA637219_S_NODE_3614_length_250_cov_1.059701_g3569_i0 PRJNA637219 3614 250 1.059701 2.6492525 Nyctibatrachus kempholeyensis 1104420 Chordata Chordata 53.1 4.86e-6   NR AEX09708.1 1104420 g3569 i0 50.8 6.06 63 31 75.6 0 2 190 55 117 AEX09708.1 NADH dehydrogenase 1, partial [Nyctibatrachus kempholeyensis] diamond 1515 53.5 0.992523364485981 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Nyctibatrachidae Nyctibatrachus Nyctibatrachus kempholeyensis
31262564 31262564 PRJNA637219_S_NODE_14675_length_163_cov_0.894737_g14630_i0 PRJNA637219 14675 163 0.894737 1.45842131 Chordata 7711 Chordata Chordata 80.9 1.02e-16   NR YP_009164722.1 57247 g14630 i0 79.2 24.3865030674847 53 11 97.5 0 161 3 163 215 YP_009164722.1 cytochrome c oxidase subunit III [Psittacus erithacus] diamond 3975 80.9 1 Eukaryota Opisthokonta Metazoa Chordata Aves Psittaciformes Psittacidae Psittacus Psittacus erithacus
31547422 31547422 PRJNA637219_S_NODE_10016_length_170_cov_1.264463_g9971_i0 PRJNA637219 10016 170 1.264463 2.1495871 Chordata 7711 Chordata Chordata 43.9 0.00331   NR MBZ3872547.1 30640 g9971 i0 48 9.70588235294118 50 26 88.2 0 18 167 28 77 MBZ3872547.1 60S ribosomal protein L23a [Sciurus carolinensis] diamond 1650 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Sciurus Sciurus carolinensis
31914320 31914320 PRJNA637219_S_NODE_4657_length_226_cov_1.022599_g4612_i0 PRJNA637219 4657 226 1.022599 2.31107374 Amblyraja radiata 386614 Chordata Chordata 46.6 5.72e-4   NR XP_032881096.1 386614 g4612 i0 57.5 13.5929203539823 40 17 53.1 0 164 45 111 150 XP_032881096.1 ubiquitin-40S ribosomal protein S27a [Amblyraja radiata] diamond 3072 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Amblyraja Amblyraja radiata
32009278 32009278 PRJNA637219_S_NODE_9318_length_175_cov_0.809524_g9273_i0 PRJNA637219 9318 175 0.809524 1.416667 Sciurus carolinensis 30640 Chordata Chordata 40 0.0487   NR MBZ3884815.1 30640 g9273 i0 42.6 0.805714285714286 47 27 80.6 0 173 33 36 82 MBZ3884815.1 60S ribosomal protein L26 [Sciurus carolinensis] diamond 141 40 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Sciurus Sciurus carolinensis
32294379 32294379 PRJNA637219_S_NODE_5059_length_219_cov_1.158824_g5014_i0 PRJNA637219 5059 219 1.158824 2.53782456 Cervus elaphus 9860 Chordata Chordata 57 9.84e-8   NR XP_043777119.1 9860 g5014 i0 54.4 8.58904109589041 57 26 78.1 0 3 173 59 115 XP_043777119.1 40S ribosomal protein S10-like isoform X2 [Cervus elaphus] diamond 1881 57.4 0.993031358885017 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Cervus Cervus elaphus
32401564 32401564 PRJNA637219_S_NODE_8639_length_180_cov_0.816794_g8594_i0 PRJNA637219 8639 180 0.816794 1.4702292 Amphibia 8292 Chordata Chordata 48.9 5.13e-5   NR OCT85768.1 8355 g8594 i0 63.3 20 60 22 100 0 180 1 99 158 OCT85768.1 hypothetical protein XELAEV_18023939mg [Xenopus laevis] diamond 3600 49.3 0.991886409736308 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
32547367 32547367 PRJNA637219_S_NODE_12219_length_166_cov_0.846154_g12174_i0 PRJNA637219 12219 166 0.846154 1.40461564 Latimeria chalumnae 7897 Chordata Chordata 70.5 1.92e-12   NR XP_006003406.1 7897 g12174 i0 58.2 13.9156626506024 55 23 99.4 0 1 165 186 240 XP_006003406.1 creatine kinase, brain a isoform X2 [Latimeria chalumnae] diamond 2310 70.5 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
32578898 32578898 PRJNA637219_S_NODE_9439_length_174_cov_0.968000_g9394_i0 PRJNA637219 9439 174 0.968 1.68432 Manis javanica 9974 Chordata Chordata 50.4 1.89e-5   NR KAI5930445.1 9974 g9394 i0 60.4 1.68965517241379 48 19 82.8 0 25 168 110 157 KAI5930445.1 Polyubiquitin-B [Manis javanica] diamond 294 50.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Pholidota Manidae Manis Manis javanica
32622540 32622540 PRJNA637219_S_NODE_8600_length_180_cov_1.236641_g8555_i0 PRJNA637219 8600 180 1.236641 2.2259538 Mammalia 40674 Chordata Chordata 43.9 0.00347   NR XP_050019838.1 100897 g8555 i0 59.6 3.91666666666667 47 19 78.3 0 142 2 101 147 XP_050019838.1 60S ribosomal protein L36a-like [Alexandromys fortis] diamond 705 44.3 0.99097065462754 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Cricetidae Alexandromys Alexandromys fortis
32653791 32653791 PRJNA637219_S_NODE_4600_length_227_cov_0.960674_g4555_i0 PRJNA637219 4600 227 0.960674 2.18072998 Chordata 7711 Chordata Chordata 50.4 5.59e-5   NR CAM5172849.1 27787 g4555 i0 61.5 8.29955947136564 39 15 51.5 0 12 128 344 382 CAM5172849.1 unnamed protein product [Eretmochelys imbricata] diamond 1884 50.4 1 Eukaryota Opisthokonta Metazoa Chordata   Testudines Cheloniidae Eretmochelys Eretmochelys imbricata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;