RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "diamond", bioproject = "PRJNA637219" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 5 ✖

bioproject 1

  • PRJNA637219 · 5 ✖

analysis 1

  • diamond · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26637767 26637767 PRJNA637219_S_NODE_11001_length_167_cov_0.864407_g10956_i0 PRJNA637219 11001 167 0.864407 1.44355969 Monoraphidium neglectum 145388 Plants Plants 43.5 0.00134   NR XP_013891194.1 145388 g10956 i0 42.9 1.50898203592814 42 24 75.4 0 167 42 21 62 XP_013891194.1 hypothetical protein MNEG_15788 [Monoraphidium neglectum] diamond 252 43.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium neglectum
28533920 28533920 PRJNA637219_S_NODE_10507_length_167_cov_1.296610_g10462_i0 PRJNA637219 10507 167 1.29661 2.1653387 Ulva partita 1605170 Plants Plants 97.4 1.28e-24   NR BAV58192.1 1605170 g10462 i0 80 0.988023952095808 55 11 98.8 0 2 166 51 105 BAV58192.1 H/ACA ribonucleoprotein complex subunit 3 [Ulva partita] diamond 165 97.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulvales Ulvaceae Ulva Ulva partita
30270832 30270832 PRJNA637219_S_NODE_712_length_490_cov_7.390023_g667_i0 PRJNA637219 712 490 7.390023 36.2111127 Picochlorum sp. BPE23 2696299 Plants Plants 142 2.1e-40   NR KAI8104783.1 2696299 g667 i0 65.6 3.03673469387755 122 42 74.7 0 27 392 1 122 KAI8104783.1 hypothetical protein M9434_003335 [Picochlorum sp. BPE23] diamond 1488 142 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. BPE23
30270833 30270833 PRJNA637219_S_NODE_7452_length_190_cov_1.085106_g7407_i0 PRJNA637219 7452 190 1.085106 2.0617014 Gonium pectorale 33097 Plants Plants 52.4 6.96e-6   NR KXZ42091.1 33097 g7407 i0 77.8 2.13157894736842 27 6 42.6 0 190 110 285 311 KXZ42091.1 hypothetical protein GPECTOR_208g403 [Gonium pectorale] diamond 405 52.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Gonium Gonium pectorale
31692840 31692840 PRJNA637219_S_NODE_16477_length_161_cov_1.366071_g16432_i0 PRJNA637219 16477 161 1.366071 2.19937431 Tetraselmis sp. RG-15 65602 Plants Plants 46.2 6.67e-4   NR AAB70556.1 65602 g16432 i0 87 0.428571428571429 23 3 42.9 0 161 93 229 251 AAB70556.1 chlorophyll a/b binding protein [Tetraselmis sp. RG-15] diamond 69 46.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorodendrophyceae Chlorodendrales Chlorodendraceae Tetraselmis Tetraselmis sp. RG-15

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;