RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA637219" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 4 ✖

bioproject 1

  • PRJNA637219 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1884993 1884993 PRJNA637219_S_NODE_1702_length_342_cov_2.044369_g1657_i0 PRJNA637219 1702 342 2.044369 6.99174198 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 158 2.8e-46   NR KAL1496287.1 97485 g1657 i0 67.3 4.96491228070175 113 33 99.1 1 341 3 84 192 KAL1496287.1 hypothetical protein AB1Y20_016250 [Prymnesium parvum] diamond 1698 158 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium parvum
27460366 27460366 PRJNA637219_S_NODE_14263_length_164_cov_0.869565_g14218_i0 PRJNA637219 14263 164 0.869565 1.4260866 Emiliania huxleyi CCMP1516 280463 Haptophyta other_Eukaryota 55.5 4.02e-7   NR XP_005760544.1 280463 g14218 i0 74.3 0.640243902439024 35 9 64 0 2 106 134 168 XP_005760544.1 RNA-binding protein [Emiliania huxleyi CCMP1516] diamond 105 55.5 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
28186165 28186165 PRJNA637219_S_NODE_16066_length_162_cov_0.902655_g16021_i0 PRJNA637219 16066 162 0.902655 1.4623011 Prymnesium sp. 2812485 Haptophyta other_Eukaryota 58.2 4.61e-8   NR KAL3906606.1 2812485 g16021 i0 49.1 1.94444444444444 53 27 98.1 0 4 162 249 301 KAL3906606.1 MAG: hypothetical protein SGPRY_010489 [Prymnesium sp.] diamond 315 58.2 1 Eukaryota Haptista   Haptophyta   Prymnesiales Prymnesiaceae Prymnesium Prymnesium sp.
31692843 31692843 PRJNA637219_S_NODE_5537_length_212_cov_1.251534_g5492_i0 PRJNA637219 5537 212 1.251534 2.65325208 Chrysochromulina tobinii 1460289 Haptophyta other_Eukaryota 48.5 2.21e-4   NR KOO31568.1 1460289 g5492 i0 39.1 1.81132075471698 64 17 90.6 1 3 194 346 387 KOO31568.1 hypothetical protein Ctob_005992 [Chrysochromulina tobinii] diamond 384 48.5 1 Eukaryota Haptista   Haptophyta   Prymnesiales Chrysochromulinaceae Chrysochromulina Chrysochromulina tobinii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;