RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA637219" and tax_clade = "Amoebozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 13 ✖

bioproject 1

  • PRJNA637219 · 13 ✖

analysis 1

  • diamond · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3706685 3706685 PRJNA637219_S_NODE_1743_length_339_cov_1.458621_g1698_i0 PRJNA637219 1743 339 1.458621 4.94472519 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 153 4.279999999999999e-43   NR ABL74967.1 5755 g1698 i0 62.4 1.0353982300885 117 40 100 1 339 1 83 199 ABL74967.1 cysteine protease [Acanthamoeba castellanii] diamond 351 153 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26744973 26744973 PRJNA637219_S_NODE_10801_length_167_cov_0.864407_g10756_i0 PRJNA637219 10801 167 0.864407 1.44355969 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 75.5 2.38e-14   NR AAL67857.1 65661 g10756 i0 61.5 2.82035928143713 52 20 93.4 0 6 161 183 234 AAL67857.1 cysteine proteinase [Acanthamoeba healyi] diamond 471 75.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba healyi
27554693 27554693 PRJNA637219_S_NODE_14404_length_163_cov_1.342105_g14359_i0 PRJNA637219 14404 163 1.342105 2.18763115 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 54.3 1.73e-7   NR 1PRQ_A 5755 g14359 i0 75.8 2.39263803680982 33 8 60.7 0 5 103 93 125 1PRQ_A Chain A, PROFILIN IA [Acanthamoeba castellanii] diamond 390 54.3 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27713204 27713204 PRJNA637219_S_NODE_1424_length_368_cov_1.968652_g1379_i0 PRJNA637219 1424 368 1.968652 7.24463936 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 162 3.09e-45   NR XP_004342296.1 1257118 g1379 i0 68.1 0.970108695652174 119 38 97 0 361 5 113 231 XP_004342296.1 carboxypeptidase Ylike protein [Acanthamoeba castellanii str. Neff] diamond 357 162 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28312829 28312829 PRJNA637219_S_NODE_14686_length_163_cov_0.894737_g14641_i0 PRJNA637219 14686 163 0.894737 1.45842131 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 71.2 4.79e-13   NR ABD46543.1 5755 g14641 i0 64 0.920245398773006 50 18 92 0 1 150 56 105 ABD46543.1 rhodanese-related sulfurtransferase, partial [Acanthamoeba castellanii] diamond 150 71.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29322974 29322974 PRJNA637219_S_NODE_9009_length_177_cov_1.195312_g8964_i0 PRJNA637219 9009 177 1.195312 2.11570224 Dictyostelium purpureum 5786 Evosea other_Eukaryota 82 5.14e-17   NR XP_003292664.1 5786 g8964 i0 62.1 0.983050847457627 58 19 98.3 1 3 176 161 215 XP_003292664.1 uncharacterized protein DICPUDRAFT_157402 [Dictyostelium purpureum] diamond 174 82 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
29954649 29954649 PRJNA637219_S_NODE_4951_length_220_cov_9.789474_g4906_i0 PRJNA637219 4951 220 9.789474 21.5368428 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 41.6 0.0445   NR XP_004339586.1 1257118 g4906 i0 50 1.2 44 22 60 0 142 11 22 65 XP_004339586.1 uncharacterized protein ACA1_063370 [Acanthamoeba castellanii str. Neff] diamond 264 41.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31060738 31060738 PRJNA637219_S_NODE_6175_length_204_cov_0.987097_g6130_i0 PRJNA637219 6175 204 0.987097 2.01367788 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 42 0.021   NR XP_004342208.1 1257118 g6130 i0 44.6 0.823529411764706 56 28 82.4 1 199 32 65 117 XP_004342208.1 LIM domain containing protein [Acanthamoeba castellanii str. Neff] diamond 168 42 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31598218 31598218 PRJNA637219_S_NODE_7356_length_191_cov_1.077465_g7311_i0 PRJNA637219 7356 191 1.077465 2.05795815 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47.8 3.2e-4   NR XP_004333504.1 1257118 g7311 i0 33.9 0.973821989528796 62 41 97.4 0 1 186 131 192 XP_004333504.1 uncharacterized protein ACA1_027160, partial [Acanthamoeba castellanii str. Neff] diamond 186 47.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31661085 31661085 PRJNA637219_S_NODE_11857_length_166_cov_0.871795_g11812_i0 PRJNA637219 11857 166 0.871795 1.4471797 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 63.2 8.23e-10   NR XP_004352734.1 1257118 g11812 i0 58.6 1.04819277108434 58 21 99.4 1 1 165 8 65 XP_004352734.1 WD repeatcontaining protein [Acanthamoeba castellanii str. Neff] diamond 174 63.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31661086 31661086 PRJNA637219_S_NODE_12377_length_165_cov_1.318966_g12332_i0 PRJNA637219 12377 165 1.318966 2.1762939 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 93.2 1.66e-20   NR XP_004341068.1 1257118 g12332 i0 83.3 3.92727272727273 54 9 98.2 0 163 2 7 60 XP_004341068.1 polyadenylate-binding protein family protein [Acanthamoeba castellanii str. Neff] diamond 648 93.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32578896 32578896 PRJNA637219_S_NODE_8479_length_181_cov_1.159091_g8434_i0 PRJNA637219 8479 181 1.159091 2.09795471 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 73.9 4.37e-15   NR 1PRQ_A 5755 g8434 i0 61 1.93922651933702 59 23 97.8 0 3 179 24 82 1PRQ_A Chain A, PROFILIN IA [Acanthamoeba castellanii] diamond 351 73.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32874500 32874500 PRJNA637219_S_NODE_3640_length_249_cov_1.325000_g3595_i0 PRJNA637219 3640 249 1.325 3.29925 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 142 7.22e-41   NR AFX73089.1 497998 g3595 i0 79.3 2.96385542168675 82 17 98.8 0 247 2 25 106 AFX73089.1 elongation factor 2 alpha, partial [Arcella hemisphaerica] diamond 738 143 0.993006993006993 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Arcellidae Arcella Arcella hemisphaerica

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;