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contig_metadata

32 rows where analysis = "diamond", bioproject = "PRJNA635874" and tax_phylum = "Campylobacterota"

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tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 32 ✖

tax_kingdom 1

bioproject 1

  • PRJNA635874 · 32 ✖

analysis 1

  • diamond · 32 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26700972 26700972 PRJNA635874_P_NODE_56821_length_247_cov_0.885057_g56674_i0 PRJNA635874 56821 247 0.885057 2.18609079 Helicobacter pylori 210 Bacteria Bacteria 65.5 1.2e-10   NR GAB0054170.1 210 g56674 i0 61.1 13.8097165991903 54 21 65.6 0 245 84 38 91 GAB0054170.1 hypothetical protein YGH029_14930 [Helicobacter pylori] diamond 3411 65.9 0.993930197268589 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27017666 27017666 PRJNA635874_P_NODE_52582_length_249_cov_0.875000_g52435_i0 PRJNA635874 52582 249 0.875 2.17875 Helicobacter pylori 210 Bacteria Bacteria 48.1 4.47e-5   NR GAA9042970.1 210 g52435 i0 44.1 0.819277108433735 68 36 81.9 1 34 237 3 68 GAA9042970.1 hypothetical protein Kyoto184A_02490 [Helicobacter pylori] diamond 204 48.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27112437 27112437 PRJNA635874_P_NODE_34322_length_286_cov_2.450704_g34175_i0 PRJNA635874 34322 286 2.450704 7.00901344 Helicobacter pylori 210 Bacteria Bacteria 50.8 2.27e-5   NR GAA8857246.1 210 g34175 i0 66.7 0.566433566433566 27 9 28.3 0 29 109 67 93 GAA8857246.1 hypothetical protein Kyoto154A_2180 [Helicobacter pylori] diamond 162 50.8 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27270579 27270579 PRJNA635874_P_NODE_69583_length_242_cov_0.911243_g69436_i0 PRJNA635874 69583 242 0.911243 2.20520806 Helicobacter pylori 210 Bacteria Bacteria 71.6 1.22e-12   NR GAA6899356.1 210 g69436 i0 70.2 0.706611570247934 57 16 69.4 1 212 45 203 259 GAA6899356.1 hypothetical protein Kyoto207A_1070 [Helicobacter pylori] diamond 171 71.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27334022 27334022 PRJNA635874_P_NODE_57123_length_247_cov_0.885057_g56976_i0 PRJNA635874 57123 247 0.885057 2.18609079 Helicobacter pylori 210 Bacteria Bacteria 48.5 3.73e-5   NR GAA6800220.1 210 g56976 i0 62.2 1.32388663967611 37 14 44.9 0 124 14 36 72 GAA6800220.1 hypothetical protein Kyoto200A_2030 [Helicobacter pylori] diamond 327 48.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27567284 27567284 PRJNA635874_P_NODE_59864_length_246_cov_0.890173_g59717_i0 PRJNA635874 59864 246 0.890173 2.18982558 root 1 Root_unresolved Root_unresolved 51.2 1.34e-6   NR GAA8512346.1 210 g59717 i0 68.6 1.74390243902439 35 11 42.7 0 245 141 11 45 GAA8512346.1 hypothetical protein oki1_15470 [Helicobacter pylori] diamond 429 51.6 0.992248062015504 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27757093 27757093 PRJNA635874_P_NODE_33404_length_290_cov_0.811060_g33257_i0 PRJNA635874 33404 290 0.81106 2.352074 root 1 Root_unresolved Root_unresolved 94.4 2.67e-21   NR WP_341550835.1 195 g33257 i0 59.4 11.7931034482759 96 38 98.3 1 288 4 125 220 WP_341550835.1 reverse transcriptase domain-containing protein [Campylobacter coli] diamond 3420 94.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
27902038 27902038 PRJNA635874_P_NODE_7065_length_536_cov_0.876890_g6920_i0 PRJNA635874 7065 536 0.87689 4.7001304 Helicobacter pylori 210 Bacteria Bacteria 75.9 3.5e-14   NR GAA6899797.1 210 g6920 i0 60.9 0.358208955223881 64 25 35.8 0 316 507 54 117 GAA6899797.1 hypothetical protein Kyoto207A_1280 [Helicobacter pylori] diamond 192 75.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28312816 28312816 PRJNA635874_P_NODE_62386_length_245_cov_0.895349_g62239_i0 PRJNA635874 62386 245 0.895349 2.19360505 Helicobacter pylori 210 Bacteria Bacteria 43.5 0.00226   NR GAA8697141.1 210 g62239 i0 52.5 0.489795918367347 40 19 49 0 242 123 18 57 GAA8697141.1 hypothetical protein Kyoto145A_2860 [Helicobacter pylori] diamond 120 43.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28375776 28375776 PRJNA635874_P_NODE_63086_length_245_cov_0.895349_g62939_i0 PRJNA635874 63086 245 0.895349 2.19360505 Helicobacter pylori 210 Bacteria Bacteria 70.1 3.45e-12   NR GAA6795622.1 210 g62939 i0 61.5 1.59183673469388 65 25 79.6 0 245 51 10 74 GAA6795622.1 hypothetical protein Kyoto200A_0460 [Helicobacter pylori] diamond 390 70.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28407466 28407466 PRJNA635874_P_NODE_47566_length_251_cov_0.865169_g47419_i0 PRJNA635874 47566 251 0.865169 2.17157419 Campylobacter coli 195 Bacteria Bacteria 64.7 3.22e-10   NR WP_341550835.1 195 g47419 i0 67.4 4.11155378486056 43 14 51.4 0 21 149 152 194 WP_341550835.1 reverse transcriptase domain-containing protein [Campylobacter coli] diamond 1032 64.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
28407488 28407488 PRJNA635874_P_NODE_8606_length_494_cov_2.560570_g8460_i0 PRJNA635874 8606 494 2.56057 12.6492158 Campylobacter jejuni 197 Bacteria Bacteria 133 1.06e-36   NR WP_341550141.1 197 g8460 i0 61.2 0.625506072874494 103 40 62.6 0 447 139 14 116 WP_341550141.1 hypothetical protein, partial [Campylobacter jejuni] diamond 309 133 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
28420098 28420098 PRJNA635874_P_NODE_20926_length_347_cov_0.948905_g20779_i0 PRJNA635874 20926 347 0.948905 3.29270035 root 1 Root_unresolved Root_unresolved 74.7 1.72e-13   NR WP_341550835.1 195 g20779 i0 70.8 7.3314121037464 48 14 41.5 0 1 144 151 198 WP_341550835.1 reverse transcriptase domain-containing protein [Campylobacter coli] diamond 2544 75.1 0.994673768308922 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
28546457 28546457 PRJNA635874_P_NODE_45447_length_253_cov_1.044444_g45300_i0 PRJNA635874 45447 253 1.044444 2.64244332 Bacteria 2 Bacteria Bacteria 53.1 1.31e-6   NR GAA6899797.1 210 g45300 i0 54.9 1.29249011857708 51 23 60.5 0 38 190 2 52 GAA6899797.1 hypothetical protein Kyoto207A_1280 [Helicobacter pylori] diamond 327 53.1 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28786120 28786120 PRJNA635874_P_NODE_20607_length_349_cov_0.721014_g20460_i0 PRJNA635874 20607 349 0.721014 2.51633886 Helicobacter pylori 210 Bacteria Bacteria 72.4 1.66e-12   NR GAA6795622.1 210 g20460 i0 77.3 2.39828080229226 44 10 37.8 0 2 133 212 255 GAA6795622.1 hypothetical protein Kyoto200A_0460 [Helicobacter pylori] diamond 837 72.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28830226 28830226 PRJNA635874_P_NODE_49088_length_250_cov_0.870056_g48941_i0 PRJNA635874 49088 250 0.870056 2.17514 root 1 Root_unresolved Root_unresolved 63.2 1.75e-9   NR WP_341549904.1 197 g48941 i0 50 1.344 56 28 67.2 0 172 5 90 145 WP_341549904.1 hypothetical protein, partial [Campylobacter jejuni] diamond 336 63.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
29039138 29039138 PRJNA635874_P_NODE_69108_length_242_cov_0.911243_g68961_i0 PRJNA635874 69108 242 0.911243 2.20520806 Helicobacter pylori 210 Bacteria Bacteria 49.7 2.06e-5   NR GAA9128289.1 210 g68961 i0 85.2 0.669421487603306 27 4 33.5 0 160 240 67 93 GAA9128289.1 hypothetical protein Kyoto190A_1620 [Helicobacter pylori] diamond 162 49.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29196903 29196903 PRJNA635874_P_NODE_66269_length_243_cov_1.200000_g66122_i0 PRJNA635874 66269 243 1.2 2.916 Campylobacter lari 201 Bacteria Bacteria 80.5 7.73e-18   NR WP_240388843.1 201 g66122 i0 70.5 0.753086419753086 61 18 75.3 0 61 243 11 71 WP_240388843.1 hypothetical protein, partial [Campylobacter lari] diamond 183 80.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter lari
29259702 29259702 PRJNA635874_P_NODE_47969_length_251_cov_0.865169_g47822_i0 PRJNA635874 47969 251 0.865169 2.17157419 Helicobacter pylori 210 Bacteria Bacteria 40.4 0.0388   NR GAA9231934.1 210 g47822 i0 66.7 0.358565737051793 30 10 35.9 0 212 123 6 35 GAA9231934.1 hypothetical protein Kyoto198A_4860 [Helicobacter pylori] diamond 90 40.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29322951 29322951 PRJNA635874_P_NODE_42689_length_261_cov_1.255319_g42542_i0 PRJNA635874 42689 261 1.255319 3.27638259 Helicobacter pylori 210 Bacteria Bacteria 67.4 6.72e-13   NR GAA8906355.1 210 g42542 i0 82.9 0.402298850574713 35 6 40.2 0 250 146 12 46 GAA8906355.1 hypothetical protein Kyoto166A_0340 [Helicobacter pylori] diamond 105 67.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29367211 29367211 PRJNA635874_P_NODE_20789_length_347_cov_1.989051_g20642_i0 PRJNA635874 20789 347 1.989051 6.90200697 root 1 Root_unresolved Root_unresolved 105 8.7e-27   NR WP_238408432.1 210 g20642 i0 75.3 5.04899135446686 73 18 63.1 0 320 102 30 102 WP_238408432.1 DUF1398 family protein, partial [Helicobacter pylori] diamond 1752 105 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29386349 29386349 PRJNA635874_P_NODE_50989_length_249_cov_1.232955_g50842_i0 PRJNA635874 50989 249 1.232955 3.07005795 Helicobacter pylori 210 Bacteria Bacteria 102 2.11e-26   NR GAA8565153.1 210 g50842 i0 72.5 0.831325301204819 69 18 81.9 1 249 46 15 83 GAA8565153.1 hypothetical protein oki142_14710 [Helicobacter pylori] diamond 207 102 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29859783 29859783 PRJNA635874_P_NODE_46711_length_251_cov_0.865169_g46564_i0 PRJNA635874 46711 251 0.865169 2.17157419 Helicobacter pylori 210 Bacteria Bacteria 40 0.0454   NR GAA6991793.1 210 g46564 i0 46.3 0.49003984063745 41 22 49 0 42 164 1 41 GAA6991793.1 hypothetical protein Kyoto211A_4670 [Helicobacter pylori] diamond 123 40 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30712857 30712857 PRJNA635874_P_NODE_57954_length_247_cov_0.885057_g57807_i0 PRJNA635874 57954 247 0.885057 2.18609079 Campylobacter coli 195 Bacteria Bacteria 83.6 2.17e-17   NR WP_341550835.1 195 g57807 i0 57.3 0.910931174089069 75 29 91.1 1 225 1 125 196 WP_341550835.1 reverse transcriptase domain-containing protein [Campylobacter coli] diamond 225 83.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
30788571 30788571 PRJNA635874_P_NODE_59094_length_246_cov_0.890173_g58947_i0 PRJNA635874 59094 246 0.890173 2.18982558 root 1 Root_unresolved Root_unresolved 58.9 3.02e-9   NR GAA8909605.1 210 g58947 i0 55.4 2.09756097560976 56 25 68.3 0 10 177 26 81 GAA8909605.1 hypothetical protein Kyoto166A_1730 [Helicobacter pylori] diamond 516 58.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30807719 30807719 PRJNA635874_P_NODE_64394_length_244_cov_0.900585_g64247_i0 PRJNA635874 64394 244 0.900585 2.1974274 Helicobacter pylori 210 Bacteria Bacteria 46.2 2.43e-4   NR WP_316495820.1 210 g64247 i0 57.6 0.405737704918033 33 14 40.6 0 99 1 15 47 WP_316495820.1 hypothetical protein, partial [Helicobacter pylori] diamond 99 46.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30883284 30883284 PRJNA635874_P_NODE_72714_length_241_cov_0.916667_g72567_i0 PRJNA635874 72714 241 0.916667 2.20916747 Pseudomonadati 3379134 Bacteria Bacteria 57.4 1.54e-8   NR WP_182878944.1 195 g72567 i0 68.2 1.66804979253112 44 14 54.8 0 139 8 15 58 WP_182878944.1 hypothetical protein, partial [Campylobacter coli] diamond 402 57.8 0.993079584775087 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter coli
31249974 31249974 PRJNA635874_P_NODE_36395_length_280_cov_1.314010_g36248_i0 PRJNA635874 36395 280 1.31401 3.679228 Helicobacter pylori 210 Bacteria Bacteria 117 1.09e-31   NR WP_322538260.1 210 g36248 i0 64.4 1.90714285714286 90 32 96.4 0 1 270 16 105 WP_322538260.1 hypothetical protein, partial [Helicobacter pylori] diamond 534 117 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31325762 31325762 PRJNA635874_P_NODE_56635_length_247_cov_0.885057_g56488_i0 PRJNA635874 56635 247 0.885057 2.18609079 root 1 Root_unresolved Root_unresolved 40.8 0.0345   NR GAA8684589.1 210 g56488 i0 81 1.2753036437247 21 4 25.5 0 69 131 25 45 GAA8684589.1 hypothetical protein Kyoto145A_1090 [Helicobacter pylori] diamond 315 41.2 0.990291262135922 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31439754 31439754 PRJNA635874_P_NODE_6176_length_566_cov_1.075051_g6032_i0 PRJNA635874 6176 566 1.075051 6.08478866 Helicobacter pylori 210 Bacteria Bacteria 75.9 4.65e-14   NR GAA8808843.1 210 g6032 i0 72.3 2.24204946996466 47 13 24.9 0 349 209 18 64 GAA8808843.1 hypothetical protein Hpoki86_14860 [Helicobacter pylori] diamond 1269 75.9 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32420630 32420630 PRJNA635874_P_NODE_71299_length_242_cov_0.905325_g71152_i0 PRJNA635874 71299 242 0.905325 2.1908865 Helicobacter pylori 210 Bacteria Bacteria 41.2 0.0155   NR GAA9058088.1 210 g71152 i0 76.5 0.210743801652893 17 4 21.1 0 97 147 21 37 GAA9058088.1 hypothetical protein Kyoto184A_04760 [Helicobacter pylori] diamond 51 41.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32641408 32641408 PRJNA635874_P_NODE_59300_length_246_cov_0.890173_g59153_i0 PRJNA635874 59300 246 0.890173 2.18982558 Aliarcobacter cryaerophilus 28198 Bacteria Bacteria 41.6 0.0118   NR WP_222860981.1 28198 g59153 i0 46 0.609756097560976 50 27 61 0 245 96 13 62 WP_222860981.1 hypothetical protein, partial [Aliarcobacter cryaerophilus] diamond 150 41.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;