RNAquarium Metadata Server
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contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA635874" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 13 ✖

bioproject 1

  • PRJNA635874 · 13 ✖

analysis 1

  • diamond · 13 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9536527 9536527 PRJNA635874_P_NODE_60448_length_246_cov_0.890173_g60301_i0 PRJNA635874 60448 246 0.890173 2.18982558 Acytosteliales 2058181 Evosea other_Eukaryota 136 5.06e-35   NR XP_004360305.1 261658 g60301 i0 84.6 2.91463414634146 78 12 95.1 0 12 245 1063 1140 XP_004360305.1 acetyl-CoA C-acyltransferase [Cavenderia fasciculata] diamond 717 137 0.992700729927007 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
13908140 13908140 PRJNA635874_P_NODE_16931_length_375_cov_2.397351_g16784_i0 PRJNA635874 16931 375 2.397351 8.99006625 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 184 1.28e-57   NR XP_004339588.1 1257118 g16784 i0 91 1.616 100 9 80 0 304 5 5 104 XP_004339588.1 60S ribosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 606 184 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
26985952 26985952 PRJNA635874_P_NODE_15222_length_391_cov_1.440252_g15075_i0 PRJNA635874 15222 391 1.440252 5.63138532 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 181 2.66e-52   NR XP_004334520.1 1257118 g15075 i0 66.7 0.989769820971867 129 39 99 1 389 3 248 372 XP_004334520.1 CMF receptor CMFR1, putative [Acanthamoeba castellanii str. Neff] diamond 387 181 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27397206 27397206 PRJNA635874_P_NODE_71143_length_242_cov_0.911243_g70996_i0 PRJNA635874 71143 242 0.911243 2.20520806 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 50.1 9.21e-5   NR XP_004341369.1 1257118 g70996 i0 36.4 0.954545454545455 77 41 95.5 2 1 231 234 302 XP_004341369.1 sphingomyelin phosphodiesterase, putative [Acanthamoeba castellanii str. Neff] diamond 231 50.1 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27523300 27523300 PRJNA635874_P_NODE_48803_length_250_cov_0.870056_g48656_i0 PRJNA635874 48803 250 0.870056 2.17514 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 54.3 3.38e-6   NR KAH3766129.1 1580589 g48656 i0 34.9 1.896 83 52 97.2 1 248 6 932 1014 KAH3766129.1 Ubiquitin activating enzyme [Pelomyxa schiedti] diamond 474 54.3 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
28155016 28155016 PRJNA635874_P_NODE_25945_length_320_cov_1.242915_g25798_i0 PRJNA635874 25945 320 1.242915 3.977328 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 125 9.2e-34   NR XP_004352755.1 1257118 g25798 i0 69 0.815625 87 26 80.6 1 290 33 43 129 XP_004352755.1 peptidylprolyl cis-trans isomerase, FKBP-type domain containing protein [Acanthamoeba castellanii str. Neff] diamond 261 125 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29051580 29051580 PRJNA635874_P_NODE_13168_length_415_cov_1.035088_g13021_i0 PRJNA635874 13168 415 1.035088 4.2956152 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 67.8 4.34e-10   NR KYQ89057.1 361077 g13021 i0 39.4 1.57590361445783 109 66 78.8 0 3 329 676 784 KYQ89057.1 major vault protein [Tieghemostelium lacteum] diamond 654 67.8 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Raperosteliaceae Tieghemostelium Tieghemostelium lacteum
29291448 29291448 PRJNA635874_P_NODE_57189_length_247_cov_0.885057_g57042_i0 PRJNA635874 57189 247 0.885057 2.18609079 Cavenderia fasciculata 261658 Evosea other_Eukaryota 92.4 1.27e-19   NR XP_004359266.1 261658 g57042 i0 52.6 3.69230769230769 76 36 92.3 0 246 19 454 529 XP_004359266.1 Physaropepsin [Cavenderia fasciculata] diamond 912 92.4 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
29764944 29764944 PRJNA635874_P_NODE_60891_length_245_cov_1.848837_g60744_i0 PRJNA635874 60891 245 1.848837 4.52965065 Pelomyxa schiedti 1580589 Evosea other_Eukaryota 67 1.08e-10   NR KAH3756653.1 1580589 g60744 i0 44.4 0.991836734693878 81 45 99.2 0 244 2 521 601 KAH3756653.1 glycosyl hydrolase [Pelomyxa schiedti] diamond 243 67 1 Eukaryota Amoebozoa   Evosea   Pelobiontida Pelomyxidae Pelomyxa Pelomyxa schiedti
30378200 30378200 PRJNA635874_P_NODE_71352_length_242_cov_0.881657_g71205_i0 PRJNA635874 71352 242 0.881657 2.13360994 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 80.9 1.35e-15   NR KAF2074760.1 133409 g71205 i0 46.8 5.31818181818182 77 41 95.5 0 7 237 397 473 KAF2074760.1 hypothetical protein CYY_003948 [Polysphondylium violaceum] diamond 1287 80.9 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Polysphondylium Polysphondylium violaceum
30978294 30978294 PRJNA635874_P_NODE_14054_length_404_cov_1.250755_g13907_i0 PRJNA635874 14054 404 1.250755 5.0530502 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 130 3.33e-32   NR XP_003284160.1 5786 g13907 i0 48.1 4.92326732673267 133 69 98.8 0 5 403 416 548 XP_003284160.1 uncharacterized protein DICPUDRAFT_27222 [Dictyostelium purpureum] diamond 1989 130 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium purpureum
31692807 31692807 PRJNA635874_P_NODE_27437_length_313_cov_1.920833_g27290_i0 PRJNA635874 27437 313 1.920833 6.01220729 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 79.7 1.4e-15   NR XP_004341641.1 1257118 g27290 i0 45.2 0.891373801916933 93 48 88.2 3 283 8 21 111 XP_004341641.1 uncharacterized protein ACA1_270300 [Acanthamoeba castellanii str. Neff] diamond 279 79.7 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31977525 31977525 PRJNA635874_P_NODE_60618_length_246_cov_0.890173_g60471_i0 PRJNA635874 60618 246 0.890173 2.18982558 Acytostelium subglobosum LB1 1410327 Evosea other_Eukaryota 89 2.06e-18   NR XP_012754660.1 1410327 g60471 i0 58 0.841463414634146 69 29 84.1 0 2 208 250 318 XP_012754660.1 hypothetical protein SAMD00019534_057150 [Acytostelium subglobosum LB1] diamond 207 89 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Acytosteliaceae Acytostelium Acytostelium subglobosum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;