RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA635397" and tax_phylum = "Platyhelminthes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA635397 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29354713 29354713 PRJNA635397_P_NODE_17369_length_392_cov_2.739812_g16915_i0 PRJNA635397 17369 392 2.739812 10.74006304 Rodentolepis nana 102285 Platyhelminthes Platyhelminthes 44.7 0.0375   NR VDO00230.1 102285 g16915 i0 47.1 0.260204081632653 34 18 26 0 190 89 86 119 VDO00230.1 unnamed protein product, partial [Rodentolepis nana] diamond 102 44.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Cyclophyllidea Hymenolepididae Rodentolepis Rodentolepis nana
29512304 29512304 PRJNA635397_P_NODE_12610_length_478_cov_1.419753_g12156_i0 PRJNA635397 12610 478 1.419753 6.78641934 Schistosoma mansoni 6183 Platyhelminthes Platyhelminthes 65.5 5.23e-9   NR XP_018648288.1 6183 g12156 i0 32.8 5.67364016736402 122 68 67.8 1 434 111 394 515 XP_018648288.1 putative vacuolar protein sorting 26, vps26 [Schistosoma mansoni] diamond 2712 65.5 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma mansoni
32009225 32009225 PRJNA635397_P_NODE_36878_length_260_cov_1.807487_g36424_i0 PRJNA635397 36878 260 1.807487 4.6994662 Calicophoron daubneyi 300641 Platyhelminthes Platyhelminthes 43.1 0.0344   NR CAL5134187.1 300641 g36424 i0 38.2 2.35384615384615 68 34 77.3 3 209 9 16 76 CAL5134187.1 unnamed protein product [Calicophoron daubneyi] diamond 612 43.1 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Plagiorchiida Paramphistomidae Calicophoron Calicophoron daubneyi
32547310 32547310 PRJNA635397_P_NODE_44439_length_245_cov_0.901163_g43985_i0 PRJNA635397 44439 245 0.901163 2.20784935 Schistosoma turkestanicum 1163369 Platyhelminthes Platyhelminthes 63.2 1.6e-10   NR CAH8566930.1 1163369 g43985 i0 55.9 1.62857142857143 59 25 71 1 3 176 13 71 CAH8566930.1 unnamed protein product [Schistosoma turkestanicum] diamond 399 63.2 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma turkestanicum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;