RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA635397" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA635397 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26954206 26954206 PRJNA635397_P_NODE_47982_length_228_cov_4.716129_g47528_i0 PRJNA635397 47982 228 4.716129 10.75277412 Thermoplasmata archaeon 1906666 Archaea Archaea 42.7 0.0295   NR MFQ5838049.1 1906666 g47528 i0 42.6 0.618421052631579 47 25 59.2 1 32 166 79 125 MFQ5838049.1 aminomethyltransferase family protein [Thermoplasmata archaeon] diamond 141 42.7 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
28817522 28817522 PRJNA635397_P_NODE_40288_length_251_cov_0.865169_g39834_i0 PRJNA635397 40288 251 0.865169 2.17157419 Candidatus Methanomethylophilaceae archaeon 2517205 Archaea Archaea 42.4 0.0432   NR MBQ8180247.1 2517205 g39834 i0 35.3 0.609561752988048 51 30 57.4 1 57 200 148 198 MBQ8180247.1 hypothetical protein [Candidatus Methanomethylophilaceae archaeon] diamond 153 42.4 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae   Candidatus Methanomethylophilaceae archaeon
31186507 31186507 PRJNA635397_P_NODE_33995_length_272_cov_0.984925_g33541_i0 PRJNA635397 33995 272 0.984925 2.678996 Methanothermobacter 145260 Archaea Archaea 40.8 0.0388   NR WP_074359392.1 145260 g33541 i0 36.4 0.727941176470588 66 40 72.8 1 250 53 2 65 WP_074359392.1 MULTISPECIES: KEOPS complex subunit Pcc1 [Methanothermobacter] diamond 198 40.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter  
32325965 32325965 PRJNA635397_P_NODE_32499_length_278_cov_1.902439_g32045_i0 PRJNA635397 32499 278 1.902439 5.28878042 Methanobacteriota archaeon 2026739 Archaea Archaea 43.1 0.04   NR MCL2460943.1 2026739 g32045 i0 37.3 0.89568345323741 83 51 89.6 1 21 269 182 263 MCL2460943.1 diadenylate cyclase [Methanobacteriota archaeon] diamond 249 43.1 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;