RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA635397" and tax_clade = "Discoba"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 3 ✖

bioproject 1

  • PRJNA635397 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27965274 27965274 PRJNA635397_P_NODE_9845_length_561_cov_1.778689_g9396_i0 PRJNA635397 9845 561 1.778689 9.97844529 Acrasis kona 1008807 Heterolobosea other_Eukaryota 179 2.94e-54   NR KAL0482313.1 1008807 g9396 i0 62.4 1.51336898395722 141 52 75.4 1 514 92 5 144 KAL0482313.1 peroxiredoxin [Acrasis kona] diamond 849 179 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
28249326 28249326 PRJNA635397_P_NODE_22366_length_339_cov_5.526316_g21912_i0 PRJNA635397 22366 339 5.526316 18.73421124 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 127 2.29e-35   NR KAJ9469984.1 91374 g21912 i0 55.3 1.97345132743363 114 46 96.5 2 339 13 1 114 KAJ9469984.1 hypothetical protein DIPPA_35953 [Diplonema papillatum] diamond 669 127 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
29606809 29606809 PRJNA635397_P_NODE_24590_length_322_cov_2.220884_g24136_i0 PRJNA635397 24590 322 2.220884 7.15124648 Euglena gracilis 3039 Euglenozoa other_Eukaryota 145 9.52e-39   NR BAO53981.1 3039 g24136 i0 74.4 4.63975155279503 82 21 76.4 0 254 9 4 85 BAO53981.1 NADPH-dependent thioredoxin reductase [Euglena gracilis] diamond 1494 145 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena gracilis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;