RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA635397" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 4 ✖

bioproject 1

  • PRJNA635397 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28975823 28975823 PRJNA635397_P_NODE_30008_length_290_cov_1.437788_g29554_i0 PRJNA635397 30008 290 1.437788 4.1695852 Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_1 2099671 Bacteria Bacteria 70.9 8.81e-12   NR OGG44698.1 1817868 g29554 i0 45.4 1.00344827586207 97 52 99.3 1 288 1 798 894 OGG44698.1 MAG: hypothetical protein A3F84_28760 [Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10] diamond 291 70.9 1 Bacteria Bacteria candidate phyla   Candidatus Handelsmaniibacteriota         Candidatus Handelsmanbacteria bacterium RIFCSPLOWO2_12_FULL_64_10
28975830 28975830 PRJNA635397_P_NODE_41428_length_249_cov_0.886364_g40974_i0 PRJNA635397 41428 249 0.886364 2.20704636 Candidatus Nanosynbacter sp. 2725945 Bacteria Bacteria 126 2.8099999999999998e-34   NR MBF1034843.1 2725945 g40974 i0 96.8 0.759036144578313 63 2 75.9 0 3 191 148 210 MBF1034843.1 hypothetical protein [Candidatus Nanosynbacter sp.] diamond 189 126 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp.
29386311 29386311 PRJNA635397_P_NODE_35549_length_265_cov_2.375000_g35095_i0 PRJNA635397 35549 265 2.375 6.29375 Candidatus Dependentiae bacterium 2030827 Bacteria Bacteria 47 0.00137   NR RTL06913.1 2030827 g35095 i0 37.5 0.815094339622642 72 42 78.1 1 265 59 98 169 RTL06913.1 MAG: hypothetical protein EKK58_03715 [Candidatus Dependentiae bacterium] diamond 216 47 1 Bacteria Bacteria candidate phyla             Candidatus Babelota bacterium
31325758 31325758 PRJNA635397_P_NODE_45595_length_243_cov_1.082353_g45141_i0 PRJNA635397 45595 243 1.082353 2.63011779 Pseudomonadati 3379134 Bacteria Bacteria 50.4 2.2e-5   NR MBN1695075.1 2052148 g45141 i0 41.5 2.2716049382716 53 31 65.4 0 164 6 22 74 MBN1695075.1 Hsp20/alpha crystallin family protein [candidate division WOR-3 bacterium] diamond 552 50.4 1 Bacteria Bacteria candidate phyla   candidate division WOR-3         candidate division WOR-3 bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;