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contig_metadata

24 rows where analysis = "diamond", bioproject = "PRJNA633835" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 24 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA633835 · 24 ✖

analysis 1

  • diamond · 24 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26637684 26637684 PRJNA633835_S_NODE_7361_length_275_cov_0.980198_g7293_i0 PRJNA633835 7361 275 0.980198 2.6955445 Polypterus senegalus 55291 Chordata Chordata 107 1.02e-24   NR MBN3294582.1 55291 g7293 i0 60.2 0.96 88 35 96 0 265 2 843 930 MBN3294582.1 LORF2 protein [Polypterus senegalus] diamond 264 107 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
26669137 26669137 PRJNA633835_S_NODE_9021_length_257_cov_1.086957_g8953_i0 PRJNA633835 9021 257 1.086957 2.79347949 Ranitomeya imitator 111125 Chordata Chordata 65.1 6.16e-10   NR CAJ0919964.1 111125 g8953 i0 66.7 4.62256809338521 45 15 52.5 0 257 123 141 185 CAJ0919964.1 unnamed protein product [Ranitomeya imitator] diamond 1188 65.5 0.993893129770992 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
26732364 26732364 PRJNA633835_S_NODE_261_length_837_cov_40.697644_g201_i0 PRJNA633835 261 837 40.697644 340.63928028 Polypterus senegalus 55291 Chordata Chordata 263 9.56e-77   NR MBN3294582.1 55291 g201 i0 85.1 0.530465949820789 148 22 53 0 391 834 595 742 MBN3294582.1 LORF2 protein [Polypterus senegalus] diamond 444 263 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
27207090 27207090 PRJNA633835_S_NODE_10622_length_247_cov_1.178161_g10554_i0 PRJNA633835 10622 247 1.178161 2.91005767 Staurois parvus 386267 Chordata Chordata 42.4 0.00595   NR CAI9548781.1 386267 g10554 i0 63.6 0.947368421052632 33 12 40.1 0 247 149 13 45 CAI9548781.1 unnamed protein product [Staurois parvus] diamond 234 42.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
27283180 27283180 PRJNA633835_S_NODE_10623_length_247_cov_1.149425_g10555_i0 PRJNA633835 10623 247 1.149425 2.83907975 Lepidosauria 8504 Chordata Chordata 50.4 7.41e-5   NR XP_005989425.1 7897 g10555 i0 76.7 50.2226720647773 30 7 36.4 0 92 3 667 696 XP_005989425.1 dynamin-like 120 kDa protein, mitochondrial isoform X1 [Latimeria chalumnae] diamond 12405 50.4 1 Eukaryota Opisthokonta Metazoa Chordata   Coelacanthiformes Coelacanthidae Latimeria Latimeria chalumnae
27428801 27428801 PRJNA633835_S_NODE_12463_length_230_cov_2.076433_g12395_i0 PRJNA633835 12463 230 2.076433 4.7757959 Crotalus adamanteus 8729 Chordata Chordata 97.8 1.3e-21   NR KAK9391398.1 8729 g12395 i0 63.2 1.77391304347826 68 25 88.7 0 228 25 347 414 KAK9391398.1 hypothetical protein NXF25_017787 [Crotalus adamanteus] diamond 408 97.8 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
27807674 27807674 PRJNA633835_S_NODE_144_length_1049_cov_13.812500_g84_i1 PRJNA633835 144 1049 13.8125 144.893125 Polypterus senegalus 55291 Chordata Chordata 232 2.15e-64   NR MBN3294582.1 55291 g84 i1 71.3 0.469018112488084 164 44 46.9 1 553 1044 439 599 MBN3294582.1 LORF2 protein [Polypterus senegalus] diamond 492 232 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
28249295 28249295 PRJNA633835_S_NODE_7966_length_268_cov_1.035897_g7898_i0 PRJNA633835 7966 268 1.035897 2.77620396 Polypterus senegalus 55291 Chordata Chordata 83.2 1.42e-16   NR KAG2463908.1 55291 g7898 i0 79.2 0.593283582089552 53 10 59.3 1 96 254 16 67 KAG2463908.1 TCB1 transposase, partial [Polypterus senegalus] diamond 159 83.2 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
28565215 28565215 PRJNA633835_S_NODE_9327_length_254_cov_0.917127_g9259_i0 PRJNA633835 9327 254 0.917127 2.32950258 Myxine glutinosa 7769 Chordata Chordata 65.1 5.74e-10   NR XP_067960236.1 7769 g9259 i0 71.4 2.64566929133858 56 13 65 2 86 250 113 166 XP_067960236.1 uncharacterized protein [Myxine glutinosa] diamond 672 65.1 1 Eukaryota Opisthokonta Metazoa Chordata Myxini Myxiniformes Myxinidae Myxine Myxine glutinosa
29322886 29322886 PRJNA633835_S_NODE_8829_length_259_cov_1.043011_g8761_i0 PRJNA633835 8829 259 1.043011 2.70139849 Pseudophryne corroboree 495146 Chordata Chordata 56.6 5.67e-7   NR XP_063806728.1 495146 g8761 i0 37.3 2.62934362934363 59 37 68.3 0 7 183 91 149 XP_063806728.1 uncharacterized protein LOC134990161 [Pseudophryne corroboree] diamond 681 56.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Myobatrachidae Pseudophryne Pseudophryne corroboree
29480542 29480542 PRJNA633835_S_NODE_10210_length_249_cov_0.875000_g10142_i0 PRJNA633835 10210 249 0.875 2.17875 Somniosus microcephalus 191813 Chordata Chordata 123 1.5e-30   NR WPH61295.1 191813 g10142 i0 70.7 3.95180722891566 82 24 98.8 0 2 247 680 761 WPH61295.1 reverse transcriptase [Somniosus microcephalus] diamond 984 123 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Squaliformes Somniosidae Somniosus Somniosus microcephalus
29543877 29543877 PRJNA633835_S_NODE_10270_length_249_cov_0.875000_g10202_i0 PRJNA633835 10270 249 0.875 2.17875 Ranitomeya imitator 111125 Chordata Chordata 79.3 5.41e-15   NR CAJ0932021.1 111125 g10202 i0 59.4 0.771084337349398 64 22 72.3 1 249 70 42 105 CAJ0932021.1 unnamed protein product [Ranitomeya imitator] diamond 192 79.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
29764870 29764870 PRJNA633835_S_NODE_131_length_1090_cov_14.150442_g84_i0 PRJNA633835 131 1090 14.150442 154.2398178 Polypterus senegalus 55291 Chordata Chordata 232 3.25e-64   NR MBN3294582.1 55291 g84 i0 71.3 0.451376146788991 164 44 45.1 1 497 6 439 599 MBN3294582.1 LORF2 protein [Polypterus senegalus] diamond 492 232 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
30460478 30460478 PRJNA633835_S_NODE_213_length_902_cov_15.281062_g84_i3 PRJNA633835 213 902 15.281062 137.83517924 Polypterus senegalus 55291 Chordata Chordata 232 4.2300000000000004e-65   NR MBN3294582.1 55291 g84 i3 71.3 0.545454545454545 164 44 54.5 1 255 746 439 599 MBN3294582.1 LORF2 protein [Polypterus senegalus] diamond 492 232 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
30839193 30839193 PRJNA633835_S_NODE_11574_length_243_cov_0.929412_g11506_i0 PRJNA633835 11574 243 0.929412 2.25847116 Protopterus annectens 7888 Chordata Chordata 90.9 4.24e-19   NR XP_043916150.1 7888 g11506 i0 81.1 5.88888888888889 53 10 65.4 0 161 3 616 668 XP_043916150.1 LOW QUALITY PROTEIN: uncharacterized protein K02A2.6-like [Protopterus annectens] diamond 1431 91.3 0.995618838992333 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
31294111 31294111 PRJNA633835_S_NODE_10495_length_248_cov_0.874286_g10427_i0 PRJNA633835 10495 248 0.874286 2.16822928 Anura 8342 Chordata Chordata 124 5.79e-31   NR CAJ0964630.1 111125 g10427 i0 87.1 5.25 62 8 75 0 63 248 444 505 CAJ0964630.1 unnamed protein product [Ranitomeya imitator] diamond 1302 125 0.992 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
31471565 31471565 PRJNA633835_S_NODE_8796_length_259_cov_1.349462_g8728_i0 PRJNA633835 8796 259 1.349462 3.49510658 Polypterus senegalus 55291 Chordata Chordata 115 8.89e-28   NR MBN3294582.1 55291 g8728 i0 76.1 0.776061776061776 67 16 77.6 0 202 2 920 986 MBN3294582.1 LORF2 protein [Polypterus senegalus] diamond 201 115 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31566538 31566538 PRJNA633835_S_NODE_3276_length_353_cov_1.685714_g3208_i0 PRJNA633835 3276 353 1.685714 5.95057042 Ranitomeya imitator 111125 Chordata Chordata 76.6 1.77e-13   NR CAJ0965884.1 111125 g3208 i0 92.5 0.339943342776204 40 3 34 0 179 298 10 49 CAJ0965884.1 unnamed protein product [Ranitomeya imitator] diamond 120 76.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
31598138 31598138 PRJNA633835_S_NODE_9236_length_255_cov_0.978022_g9168_i0 PRJNA633835 9236 255 0.978022 2.4939561 Polypterus senegalus 55291 Chordata Chordata 68.2 4.81e-11   NR KAG2456690.1 55291 g9168 i0 86.1 1.70588235294118 36 5 42.4 0 19 126 471 506 KAG2456690.1 AL5AP protein, partial [Polypterus senegalus] diamond 435 68.2 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31850859 31850859 PRJNA633835_S_NODE_157_length_1019_cov_13.329810_g84_i2 PRJNA633835 157 1019 13.32981 135.8307639 Polypterus senegalus 55291 Chordata Chordata 233 8.28e-65   NR MBN3294582.1 55291 g84 i2 71.3 0.482826300294406 164 44 48.3 1 255 746 439 599 MBN3294582.1 LORF2 protein [Polypterus senegalus] diamond 492 233 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
31945684 31945684 PRJNA633835_S_NODE_6377_length_288_cov_0.869767_g6309_i0 PRJNA633835 6377 288 0.869767 2.50492896 Polypterus senegalus 55291 Chordata Chordata 158 1.4199999999999999e-42   NR MBN3294582.1 55291 g6309 i0 84.6 0.947916666666667 91 14 94.8 0 16 288 758 848 MBN3294582.1 LORF2 protein [Polypterus senegalus] diamond 273 158 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
32325935 32325935 PRJNA633835_S_NODE_5159_length_307_cov_1.094017_g5091_i0 PRJNA633835 5159 307 1.094017 3.35863219 Polypterus senegalus 55291 Chordata Chordata 74.3 5.91e-13   NR XP_039591329.1 55291 g5091 i0 78.3 4.76872964169381 46 10 45 0 31 168 383 428 XP_039591329.1 zinc finger BED domain-containing protein 4-like isoform X2 [Polypterus senegalus] diamond 1464 74.3 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Polypterus Polypterus senegalus
32578809 32578809 PRJNA633835_S_NODE_10139_length_249_cov_1.119318_g10071_i0 PRJNA633835 10139 249 1.119318 2.78710182 Rana temporaria 8407 Chordata Chordata 47.4 9.63e-4   NR XP_040207327.1 8407 g10071 i0 95 0.240963855421687 20 1 24.1 0 190 249 379 398 XP_040207327.1 calpain-2 catalytic subunit-like [Rana temporaria] diamond 60 47.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
32893350 32893350 PRJNA633835_S_NODE_12100_length_241_cov_0.916667_g12032_i0 PRJNA633835 12100 241 0.916667 2.20916747 Staurois parvus 386267 Chordata Chordata 76.6 2.23e-16   NR CAI9561898.1 386267 g12032 i0 55.7 0.871369294605809 70 31 87.1 0 22 231 3 72 CAI9561898.1 unnamed protein product [Staurois parvus] diamond 210 76.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;