RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA633835" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA633835 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30175615 30175615 PRJNA633835_S_NODE_10752_length_247_cov_0.879310_g10684_i0 PRJNA633835 10752 247 0.87931 2.1718957 Staphylococcus aureus 1280 Bacteria Bacteria 42.4 0.0074   NR MDN8753916.1 1280 g10684 i0 78.9 0.230769230769231 19 4 23.1 0 188 244 14 32 MDN8753916.1 hypothetical protein [Staphylococcus aureus] diamond 57 42.4 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus
31914240 31914240 PRJNA633835_S_NODE_6697_length_283_cov_1.228571_g6629_i0 PRJNA633835 6697 283 1.228571 3.47685593 Streptococcus mitis 28037 Bacteria Bacteria 127 6.8399999999999985e-34   NR WP_414339826.1 28037 g6629 i0 98.7 0.837455830388693 79 1 83.7 0 282 46 10 88 WP_414339826.1 DUF1542 domain-containing protein, partial [Streptococcus mitis] diamond 237 127 1 Bacteria   Bacillati Bacillota Bacilli Lactobacillales Streptococcaceae Streptococcus Streptococcus mitis
32483888 32483888 PRJNA633835_S_NODE_9019_length_257_cov_1.103261_g8951_i0 PRJNA633835 9019 257 1.103261 2.83538077 Staphylococcus aureus 1280 Bacteria Bacteria 75.5 7.53e-16   NR MDN8753916.1 1280 g8951 i0 78.6 0.490272373540856 42 8 49 1 162 37 19 59 MDN8753916.1 hypothetical protein [Staphylococcus aureus] diamond 126 75.5 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus aureus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;