RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA633835" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA633835 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30491717 30491717 PRJNA633835_S_NODE_3173_length_356_cov_10.667845_g3105_i0 PRJNA633835 3173 356 10.667845 37.9775282 Candidatus Binatus sp. 2811406 Bacteria Bacteria 43.1 0.0456   NR HXN21033.1 2811406 g3105 i0 41.4 0.48876404494382 58 33 48.9 1 18 191 56 112 HXN21033.1 hypothetical protein [Candidatus Binatus sp.] diamond 174 43.1 1 Bacteria Bacteria candidate phyla   Candidatus Binatota Candidatus Binatia Candidatus Binatales Candidatus Binataceae Candidatus Binatus Candidatus Binatus sp.
31566539 31566539 PRJNA633835_S_NODE_7516_length_273_cov_1.105000_g7448_i0 PRJNA633835 7516 273 1.105 3.01665 Candidatus Chisholmbacteria bacterium RIFCSPHIGHO2_ 2750073 Bacteria Bacteria 42.7 0.0322   NR OGY18492.1 1797591 g7448 i0 34.8 0.725274725274725 66 41 70.3 1 220 29 15 80 OGY18492.1 MAG: hypothetical protein A2786_03270 [Candidatus Chisholmbacteria bacterium RIFCSPHIGHO2_01_FULL_52_32] diamond 198 42.7 1 Bacteria Bacteria candidate phyla   Candidatus Chisholmiibacteriota         Candidatus Chisholmbacteria bacterium RIFCSPHIGHO2_01_FULL_52_32

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;