RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA631796" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA631796 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27251489 27251489 PRJNA631796_P_NODE_12003_length_205_cov_0.944444_g11725_i0 PRJNA631796 12003 205 0.944444 1.9361102 Peronosporaceae 4777 SAR_Eukaryotes SAR_Eukaryotes 100 6.72e-23   NR CAI5722356.1 86335 g11725 i0 57.6 5.38536585365854 92 11 93.7 1 12 203 265 356 CAI5722356.1 unnamed protein product [Peronospora destructor] diamond 1104 101 0.99009900990099 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Peronospora Peronospora destructor
32357472 32357472 PRJNA631796_S_NODE_24479_length_259_cov_1.292929_g24312_i0 PRJNA631796 24479 259 1.292929 3.34868611 Achlya hypogyna 1202772 SAR_Eukaryotes SAR_Eukaryotes 75.5 8.68e-16   NR YP_008475337.1 1202772 g24312 i0 75.5 0.567567567567568 49 12 56.8 0 113 259 1 49 YP_008475337.1 ATP synthase F0 subunit 9 [Achlya hypogyna] diamond 147 75.5 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Achlya Achlya hypogyna

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;