RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA631796" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA631796 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27080883 27080883 PRJNA631796_P_NODE_12662_length_203_cov_0.901408_g12384_i0 PRJNA631796 12662 203 0.901408 1.82985824 Deltaproteobacteria bacterium 2026735 Bacteria Bacteria 42 0.041   NR NJK31080.1 2026735 g12384 i0 34.8 1.01970443349754 69 37 90.1 1 2 184 173 241 NJK31080.1 hypothetical protein [Deltaproteobacteria bacterium] diamond 207 42 1 Bacteria   Pseudomonadati Myxococcota Myxococcia       Deltaproteobacteria bacterium
28533817 28533817 PRJNA631796_P_NODE_6267_length_274_cov_1.201878_g5989_i0 PRJNA631796 6267 274 1.201878 3.29314572 Polyangia bacterium 3058050 Bacteria Bacteria 67.8 8.19e-11   NR HEY0715797.1 3058050 g5989 i0 38.7 1.82846715328467 93 45 99.6 2 273 1 290 372 HEY0715797.1 fibro-slime domain-containing protein [Polyangia bacterium] diamond 501 67.8 1 Bacteria   Pseudomonadati Myxococcota         Polyangia bacterium
30617918 30617918 PRJNA631796_P_NODE_10013_length_218_cov_0.815287_g9735_i0 PRJNA631796 10013 218 0.815287 1.77732566 Myxococcota bacterium 2818507 Bacteria Bacteria 42 0.0456   NR MEM6955040.1 2818507 g9735 i0 41.4 1.59633027522936 58 29 74.3 2 184 23 6 62 MEM6955040.1 UMP kinase [Myxococcota bacterium] diamond 348 42 1 Bacteria   Pseudomonadati Myxococcota         Myxococcota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;